Protein Detail

Protein Information

PDBId & Chain	1HC9 : A
Molecule	Alpha-bungarotoxin isoform V31
Residues	74
Sequence
SSE Sequence^*(6)	`EEEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.0.0.0-Ep.0.Ea.0-0.Ep.Ea-Ea.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1HC9_A

Protein Id: 1HC9_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1HC9_A

Protein Id: 1HC9_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-Ep	False		d2jdih2,
3	EHE	0.0-Ea	True	3S2R:A, 3S2R:B, 4EZF:A, 4EZF:B, 4OOA:A, 4OOA:B, 4OOA:C, 4OOA:D, 4OOA:E, 4OOA:F, 4R10:B,	d1clvi_, d1k91a_, 2o9uX00,
4	EHEE	0.0.0-Ea.0-Ea	False	4AEA:A, 4AEA:B, 4LFT:A, 4LFT:B, 1CTX:A,	d4aeaa_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1NTN	A	72	Alpha-elapitoxin-Nno2a	View
1hc9A00	--	74	Alpha-bungarotoxin isoform V31	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YEO	A	65	Alpha-insect toxin LqhaIT	View
3I4O	A	68	Translation initiation factor IF-1	View
3I4O	B	67	Translation initiation factor IF-1	View
3RD4	B	82	Uncharacterized protein	View
3RD4	C	80	Uncharacterized protein	View
3RD4	D	80	Uncharacterized protein	View
4INC	A	101	Histidine triad nucleotide-binding protein 2, mitochondrial	View
4M1X	A	73	Putative uncharacterized protein	View
4M1X	B	73	Putative uncharacterized protein	View
4M1X	C	71	Putative uncharacterized protein	View
4M1X	D	72	Putative uncharacterized protein	View
4OWT	B	72	SOSS complex subunit B1	View
4QL5	A	68	Translation initiation factor IF-1	View
4QL5	B	66	Translation initiation factor IF-1	View
5CY0	A	63	Toxin-5	View
5EVF	A	104	Uncharacterized protein	View
5GRO	A	103	Aspartate--tRNA(Asp/Asn) ligase	View
5GRO	B	103	Aspartate--tRNA(Asp/Asn) ligase	View
5LY5	A	77	Uncharacterized protein	View
1BCP	D	110	Pertussis toxin subunit 4	View
1BCP	F	98	Pertussis toxin subunit 5	View
1DJT	A	64	Alpha-like toxin BmK-M1	View
1DTD	B	61	Metallocarboxypeptidase inhibitor	View
1KV0	A	66	Alpha-like toxin BmK-M7	View
1LUZ	A	82	Protein K3	View
1N13	B	112	Pyruvoyl-dependent arginine decarboxylase	View
1OMY	A	64	Toxin BmKaIT1	View
1SN4	A	64	Alpha-like toxin BmK-M4	View
2HQL	A	104	Uncharacterized protein MG376 homolog	View
2PBC	A	100	Peptidyl-prolyl cis-trans isomerase FKBP2	View

Topology view of query protein [ProLego results]

1HC9 : A

Topology Information