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Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain5V6G : B
MoleculeMatrix protein 1
Residues157
Sequence
SSE Sequence*(9) HHHHHHHHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ha.Ha.Ha.Hr.0.Ha.0.Ha-0.Hp.Hr.0.0.Hr.Hr-Ha.0.0.0.Ha.Ha-0.0.0.Hp.0-0.0.0.Ha-Hp.0.0-0.0-Hp

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5V6G_B
shapeImage
Protein Id: 5V6G_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5V6G_B
shapeImage
Protein Id: 5V6G_B

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHH Ha.Ha-0 True 3RKO:A, 3RKO:E, 3RKO:G, 3RKO:K, 3SHG:B, 3THF:A, 3THF:B, 3U0C:A, 3U0C:B, 3ZE3:E, 4ADZ:A, 4ADZ:B, 4RP3:A, 4RP3:B, 4XA3:A, 5EU0:B, 5FMN:A, 5FMN:B, 5LCY:A, 5LCY:B, 5LCY:C, 5LCY:D, 5LSI:D, 5SZH:A, 5SZJ:B, 1UPT:B, 2HH7:A, 2P64:A, d1t50a_, d1uptb_, d2vv5a3, 1t50A00, 1uptF00,
3 HHH Ha.Ha-Hp True 2WY8:Q, 2XF7:A, 2XF7:B, 2XF7:C, 2XF7:D, 2XF7:E, 2XF7:F, 2XVT:A, 2XVT:B, 2XVT:C, 2XVT:D, 2XVT:E, 2XVT:F, 3A8Y:C, 3A8Y:D, 3BBZ:A, 3BBZ:B, 3EAB:A, 3EAB:B, 3EAB:C, 3EAB:D, 3EAB:E, 3EAB:F, 3GI7:A, 3GI7:B, 3GN4:A, 3L8R:A, 3L8R:B, 3L8R:C, 3L8R:D, 3L8R:E, 3L8R:F, 3L8R:G, 3L8R:H, 3LOF:A, 3LOF:B, 3LOF:C, 3LOF:D, 3LOF:E, 3LOF:F, 3MQ1:A, 3MQ1:B, 3MQ1:C, 3MQ1:D, 3MQ1:E, 3MQ1:F, 3MXZ:A, 3MZW:B, 3OVU:A, 3PH0:C, 3PH0:D, 3RGU:A, 3RGU:B, 3RGU:C, 3RGU:D, 3T47:A, 3UUL:A, 3UUL:B, 3UUN:A, 3UUN:B, 3ZE3:B, 3ZE3:C, 3ZE3:F, 4A5X:A, 4A5X:B, 4CC9:B, 4CQI:A, 4FM3:A, 4FM3:B, 4FM3:C, 4FM3:D, 4FZP:A, 4FZP:B, 4H10:A, 4HKZ:H, 4HWC:A, 4HWC:B, 4HWC:C, 4HWC:D, 4HWC:E, 4HWC:F, 4HWD:A, 4HWD:B, 4HWD:D, 4HWH:A, 4HWH:B, 4HWH:C, 4HWH:D, 4HWH:E, 4K12:B, 4KBQ:C, 4KBQ:D, 4MBQ:A, 4MBQ:B, 4MBQ:C, 4MBQ:D, 4MBQ:E, 4MBQ:F, 4NPD:A, 4NTW:C, 4PS2:A, 4TX5:A, 4TX5:B, 4U7I:A, 4U7Y:A, 4UI1:C, 4UI1:D, 4Z8L:E, 4ZNC:A, 4ZNC:B, 4ZNC:C, 5DJT:B, 5FVK:A, 5FVK:B, 5JSN:B, 5JSN:D, 5LB7:B, 1EZ3:A, 1LJ2:A, 1LP1:A, 1WRD:A, 1Z8U:A, 2C5K:T, 2E2A:A, 2ERL:A, 2FCW:A, 2FZT:A, 2GOM:A, 2J5Y:A, 2NOJ:B, 2V6Y:A, 2W2U:A, 3LF9:A, 3LG7:A, 3LHP:S, 3QWO:C, 3S1K:A, 4IOI:H, 4L8I:A, 4OYD:B, 5DJU:B, 5EFW:B, 5GNA:A, 5J0L:A, 5JSB:B, d1chua1, d1cuna2, d1ez3a_, d1fpoa2, d1g73a_, d1gpja1, d1gvna_, d1hcia4, d1hf8a1, d1iura_, d1lvfa_, d1m62a_, d1nrea_, d1nu9c1, d1o3xa_, d1o7d.1, d1qsda_, d1r4ga_, d1s35a1, d1s35a2, d1u5pa1, d1u5pa2, d1uura1, d1vcta1, d1wfda_, d1wrda1, d1x4oa1, d1x4pa1, d1x9ba_, d1xvha2, d1z8ua_, d2cpta1, d2crba1, d2e2aa_, d2erla_, d2fcwa1, d2fzta1, d2goma1, d2j5ya_, d2pmra1, d2qalt1, d2uubt1, d3bvua1, d3l8ra_, d3ldqb_, d3qwoc_, 1deeG00, 1deeG00, 1ez3A00, 1g73A00, 1gvnC00, 1hciA04, 1lj2A00, 1lp1B00, 1lreA00, 1lvfB00, 1m62A00, 1o3xA00, 1qsdA00, 1r73A00, 1t6oA00, 1wfdA00, 1x9bA00, 2e2aA00, 2erlA00, 2vqeT00,
3 HHH Ha.Hr-Hr True 2ZKO:A, 2ZKO:B, 3A01:A, 3A01:B, 3A01:E, 3A01:F, 3A02:A, 3A03:A, 3B0F:A, 3B0F:B, 3C57:A, 3CMY:A, 3FF5:A, 3FF5:B, 3L4Q:C, 3L4Q:D, 3M8A:A, 3M8A:D, 3M8A:F, 3M8A:G, 3M8A:I, 3M8A:K, 3RKQ:A, 3RKQ:B, 3RQ9:A, 3RT3:C, 3VFZ:A, 4CVD:A, 4CYC:A, 4CYC:B, 4HWF:B, 4J19:A, 4J19:B, 4RDU:A, 4RDU:D, 5AKO:A, 5AKO:B, 5B5I:A, 5B5I:B, 5BY1:A, 5BY1:B, 5COS:A, 5COS:B, 5COS:C, 5COS:D, 5DQS:D, 5EEA:A, 5EEA:B, 5EEA:G, 5EEA:J, 5EF6:A, 5EF6:B, 5EF6:G, 5EF6:J, 5H5N:A, 5H5N:B, 5HOD:A, 5JLW:A, 5JLW:D, 1AIL:A, 1B72:A, 1FJL:A, 1IG7:A, 1JGG:A, 1K61:A, 1KU3:A, 1LE8:A, 1PUF:A, 1VF6:C, 1ZOQ:C, 2H1K:A, 2P7V:B, 2R5Z:A, 2VI6:A, 5LTY:K, d1akha_, d1bw5a_, d1e3ha1, d1e3oc1, d1gdta1, d1hp8a_, d1iufa1, d1ixsa_, d1k61a_, d1k78a1, d1k99a_, d1ku3a_, d1lfba_, d1nk2p_, d1pufa_, d1rp3a3, d1rsob_, d1s7ea1, d1tc3c_, d1ug2a_, d1uhsa_, d1umqa_, d1vf6c_, d1wh7a_, d1x2ma1, d1x41a1, d1xeqa1, d1zoqc_, d2coba1, d2cpwa1, d2cqqa1, d2cu7a1, d2cufa1, d2ecba1, d2ecca1, d2hosa_, d2zkoa_, d3a02a_, d3b0fa_, 1b72A00, 1b8iA00, 1b8iB00, 1b72A00, 1b8iA00, 1b8iB00, 1e3pA02, 1hcrA00, 1hp8A00, 1ixsA00, 1jggA00, 1k61A00, 1k99A00, 1ku3A00, 1lfbA00, 1nk3P00, 1rsoB00, 1tc3C00, 1umqA00, 1vf6C00, 1wh5A00, 2hddB00,
3 HHH Hr.0-0 True 2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A, d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3 HHH 0.Ha-0 True 3FXD:B, 3HLS:A, 3HLS:B, 3MTU:A, 3MTU:B, 3MTU:C, 3MTU:D, 3PH0:A, 3S6P:G, 4HP3:C, 4LN0:C, 4M70:R, 4UG3:C, 1LWU:A, 1M93:A, 2DB7:A, 2NR5:A, 2P58:A, d1iiea_, d2db7a1, d2nr5a1, 1iieA00,
3 HHH Ha.0-Hr False 2XTC:A, 2XTC:B, 2XZ2:A, 3M8A:B, 3M8A:C, 3M8A:E, 3M8A:H, 3M8A:J, 3M8A:L, 4IHF:J, 4NKJ:A,
3 HHH 0.Ha-Hr True 3A5T:A, 3GWK:C, 3OW2:U, 3TGU:H, 3TGU:U, 4EOT:B, 4ICG:C, 4ICG:D, 4U6U:A, 4U6U:C, 4ZMK:A, 5DM6:V, 1FS1:A, 1PPJ:H, 1VQO:V, 2GUZ:B, 5GMU:A, d1fs1a1, d1k1va_, d1ppjh_, d2d8da1, d2izva1, 1fs1A00, 1k1vA00, 1ldkE00, 1pp9H00,
4 HHHH Ha.Ha.Ha-0.Hp-Ha True 3KAW:G, 3T6G:B, 3T6G:D, 4XEK:A, 4ZV0:B, 5LFJ:A, 5LFJ:B, 5LFJ:C, 5LFJ:D, 2J9U:A, 2J9W:A, 2MHR:A, 2P61:A, 3U3B:A, d1j8mf1, d1ls1a1, d1s5qb_, d1t01a2, d1v9va1, d1wgwa_, d2j9ua_, d2j9wa_, d2mhra_, d2p61a1, 1cfaA00, 1cfaA00, 1g1eB00, 1k40A00, 2mhrA00,
4 HHHH Ha.Hr.0-Hr.0-0 False 4XRM:A, 4XRM:B, 1le8B00,
4 HHHH Hr.0.Ha-0.0-0 False 3B0B:D, 4H9D:A,
4 HHHH 0.Ha.0-0.Hr-Ha False
Protein In ProLegoDB with identical/similar Topology