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Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain5F0Q : B
MoleculeDNA primase large subunit
Residues185
Sequence
SSE Sequence*(12) HHHHHHHHHHHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ha.Hr.Ha.Hr.Hr.0.Hp.Ha.Ha.Ha.Hp-0.Hr.0.Ha.0.0.0.0.0.0-0.0.Hr.0.0.0.0.Ha.0-0.0.0.0.0.0.Hr.0-0.0.0.0.0.0.0-0.Hr.0.0.0.0-0.0.0.0.0-0.0.0.0-0.Hr.Hp-Hr.Hr-Hr

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5F0Q_B
shapeImage
Protein Id: 5F0Q_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5F0Q_B
shapeImage
Protein Id: 5F0Q_B

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHH Ha.Hr-0 True 3I71:B, 4HWF:A, 4JDX:E, 4JDX:F, 4JQU:B, 4UZZ:B, 5DA5:A, 5DA5:B, 5DA5:C, 5DA5:D, 5DA5:E, 5DA5:F, 5DA5:G, 5DA5:H, 5DA5:I, 5DA5:J, 5DA5:K, 5DA5:L, 5DA5:M, 5DA5:N, 5DA5:O, 5DA5:P, 5DA5:Q, 5DA5:R, 5DA5:S, 5DA5:T, 5DA5:U, 5DA5:V, 5DA5:X, 5DA5:Z, 5FIR:B, 5FIR:D, 5FIR:F, 5FIR:H, 5L89:A, 5L89:B, 5L89:C, 5L89:D, 5L89:E, 5L89:F, 5L89:G, 5L89:H, 5L89:I, 5L89:J, 5L89:K, 5L89:L, 5L89:M, 5L89:N, 5L89:O, 5L89:P, 5L89:Q, 5L89:R, 5L89:S, 5L89:T, 5L89:U, 5L89:V, 5L89:W, 5L89:X, 5L89:Y, 5L89:Z, 5L8G:A, 5L8G:B, 5L8G:C, 5L8G:D, 5L8G:E, 5L8G:F, 5L8G:G, 5L8G:H, 5L8G:I, 5L8G:J, 5L8G:K, 5L8G:L, 5L8G:M, 5L8G:N, 5L8G:O, 5L8G:P, 5L8G:Q, 5L8G:R, 5L8G:S, 5L8G:T, 5L8G:U, 5L8G:V, 5L8G:W, 5L8G:X, 5L8G:Y, 5L8G:Z, 1VF6:A, 2CZS:A, 2OO9:A, d1ijwc_, d1vf6a_,
3 HHH Hr.Ha-Hr True 3AJF:C, 3AJF:D, 3CX5:F, 3CX5:Q, 3PH0:B, 4D6K:F, 4MZZ:A, 4MZZ:B, 1CXZ:B, 1ZEI:A, 2GSV:A, 2NN4:A, 2OXL:A, 2UWJ:E, d1cxzb_, d1fafa_, d1vq8v1, d2dt7b1, d2elca1, d2gsva1, d2nn4a1, d3cx5f1, 1cxzB00, 1cxzB00, 1fafA00, 1qzpA00, 1trlA00, 1vq8V00, 2nn4A00, 3cx5F00,
3 HHH Hr.Hr-Ha False 2YEV:C, 2YEV:F, 3BC1:F, 3CQX:C, 3CQX:D, 3LDC:A, 5HY7:C, 5HY7:D, 5J03:A, 1ZKE:A, 2IH3:C, d1r3jc_, d1zkea1, 1bhaA00, 1bhaA00,
3 HHH Hr.0-0 True 2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A, d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3 HHH 0.Hp-0 False 2ZSI:B, 3CS5:A, 3CS5:B, 3CS5:D, 4EFA:G, 4ICG:A, 4ICG:B, 5APP:A, 1LGH:A, 1M1J:A, 2F60:K, d1lgha_, d1qo8a1, 1k1fD00, 1lghA00, 1m1jA00,
3 HHH Hp.Ha-0 False 3ZRX:A, 3ZRX:B,
3 HHH Ha.Ha-0 True 3RKO:A, 3RKO:E, 3RKO:G, 3RKO:K, 3SHG:B, 3THF:A, 3THF:B, 3U0C:A, 3U0C:B, 3ZE3:E, 4ADZ:A, 4ADZ:B, 4RP3:A, 4RP3:B, 4XA3:A, 5EU0:B, 5FMN:A, 5FMN:B, 5LCY:A, 5LCY:B, 5LCY:C, 5LCY:D, 5LSI:D, 5SZH:A, 5SZJ:B, 1UPT:B, 2HH7:A, 2P64:A, d1t50a_, d1uptb_, d2vv5a3, 1t50A00, 1uptF00,
3 HHH Ha.Hp-0 False 3AAI:B, 3AAI:D, 1XOU:B, d1ud0a_, d1xoub_,
4 HHHH Ha.Hr.Ha-0.Hr-0 False 1XL3:C, d1xl3c1,
4 HHHH Hr.Hr.0-Ha.0-0 False 3OUF:A, 3OUF:B,
4 HHHH Hr.0.Hp-0.0-0 False 4ME7:E, 4ME7:F,
4 HHHH 0.Hp.Ha-0.0-0 False 2QTI:A,
4 HHHH Ha.Ha.Ha-0.0-Ha True 3IQC:A, 5K29:A, 5K29:B, 1I4Y:A, 2HMZ:A, d1bbha_, d3iqca_, 1bbhA00, 1bbhA00,
Protein In ProLegoDB with identical/similar Topology