Protein Detail

Protein Information

PDBId & Chain	4HD1 : A
Molecule	Squalene synthase HpnC
Residues	259
Sequence
SSE Sequence^*(14)	`HHHHHHHHHHHHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Hr.Ha.Hr.0.Hr.Hp.Hr.0.0.Hr.0.Ha-Hr.0.Hr.Ha.0.Ha.Hr.0.0.Hr.Hr.0-0.0.Hp.0.0.0.0.0.0.0.0-Hr.0.0.0.0.0.0.0.Ha.0-0.0.Ha.0.0.0.0.0.Hp-0.0.0.0.0.0.Hr.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.Hr-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4HD1_A

Protein Id: 4HD1_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4HD1_A

Protein Id: 4HD1_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHH	0.Hr-Hr	True	3E7L:B, 4CGE:A, 4GHJ:A, 4OW1:B, 4OW1:E, 4OW1:W, 4OW1:X, 5LUP:A, 5LUP:B, 5LUP:C, 5LUP:D, 5LUP:E, 5LUP:F, 5LUP:G, 5LUP:H, 5LUP:I, 5LUP:J, 5LUP:K, 5LUP:L, 5LUS:A, 5LUS:B, 5LUS:C, 5LUS:D, 5LUS:E, 5LUS:F, 5LUS:G, 5LUS:H, 5LUS:I, 5LUS:J, 1A0A:A, 1HYP:A, 2OYY:A, 2VKL:A, 5HUB:A,	d1a0aa_, d1hypa_, d3cjrb1, 1a0aA00, 1hypA00,
3	HHH	Hr.Ha-0	False	3GNA:A, 3IM3:A, 3TER:A, 3TER:B, 4E45:G, 4F9K:B, 4F9K:C, 4F9K:D, 4KP3:D,	d1kxpd3, d1tjla1, d2jrxa1, d3im3a_,
3	HHH	Ha.Hr-Hr	True	2ZKO:A, 2ZKO:B, 3A01:A, 3A01:B, 3A01:E, 3A01:F, 3A02:A, 3A03:A, 3B0F:A, 3B0F:B, 3C57:A, 3CMY:A, 3FF5:A, 3FF5:B, 3L4Q:C, 3L4Q:D, 3M8A:A, 3M8A:D, 3M8A:F, 3M8A:G, 3M8A:I, 3M8A:K, 3RKQ:A, 3RKQ:B, 3RQ9:A, 3RT3:C, 3VFZ:A, 4CVD:A, 4CYC:A, 4CYC:B, 4HWF:B, 4J19:A, 4J19:B, 4RDU:A, 4RDU:D, 5AKO:A, 5AKO:B, 5B5I:A, 5B5I:B, 5BY1:A, 5BY1:B, 5COS:A, 5COS:B, 5COS:C, 5COS:D, 5DQS:D, 5EEA:A, 5EEA:B, 5EEA:G, 5EEA:J, 5EF6:A, 5EF6:B, 5EF6:G, 5EF6:J, 5H5N:A, 5H5N:B, 5HOD:A, 5JLW:A, 5JLW:D, 1AIL:A, 1B72:A, 1FJL:A, 1IG7:A, 1JGG:A, 1K61:A, 1KU3:A, 1LE8:A, 1PUF:A, 1VF6:C, 1ZOQ:C, 2H1K:A, 2P7V:B, 2R5Z:A, 2VI6:A, 5LTY:K,	d1akha_, d1bw5a_, d1e3ha1, d1e3oc1, d1gdta1, d1hp8a_, d1iufa1, d1ixsa_, d1k61a_, d1k78a1, d1k99a_, d1ku3a_, d1lfba_, d1nk2p_, d1pufa_, d1rp3a3, d1rsob_, d1s7ea1, d1tc3c_, d1ug2a_, d1uhsa_, d1umqa_, d1vf6c_, d1wh7a_, d1x2ma1, d1x41a1, d1xeqa1, d1zoqc_, d2coba1, d2cpwa1, d2cqqa1, d2cu7a1, d2cufa1, d2ecba1, d2ecca1, d2hosa_, d2zkoa_, d3a02a_, d3b0fa_, 1b72A00, 1b8iA00, 1b8iB00, 1b72A00, 1b8iA00, 1b8iB00, 1e3pA02, 1hcrA00, 1hp8A00, 1ixsA00, 1jggA00, 1k61A00, 1k99A00, 1ku3A00, 1lfbA00, 1nk3P00, 1rsoB00, 1tc3C00, 1umqA00, 1vf6C00, 1wh5A00, 2hddB00,
3	HHH	Hr.0-Ha	True	3TEQ:A, 4DH2:D, 4G2K:A, 4G2K:B, 4G2K:C, 4JF3:A, 4JF3:B, 4JGS:A, 4JGS:B, 4JGS:C, 4JGS:D, 4JGS:E, 4JGS:F, 4JGS:G, 4JGS:H, 4JGS:I, 4N21:A, 4N21:B, 4N21:C, 4N21:D, 4N21:F, 2EBO:A, 5HA6:A,	2eboA00,
3	HHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3	HHH	Hr.Hp-Ha	False		d2hjqa1,
3	HHH	Hp.Hr-Hr	False		d1ujsa_, 1ujsA00,
3	HHH	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3	HHH	Hr.0-Hr	False	4XAL:A, 1QRV:A,	d1ckta_, d1cuka1, d1mn3a_, d1qrva_, d2fd5a1, 1cktA00, 1cukA03, 1cktA00, 1cukA03, 1qrvA00, 3lriA00,
3	HHH	0.Ha-0	True	3FXD:B, 3HLS:A, 3HLS:B, 3MTU:A, 3MTU:B, 3MTU:C, 3MTU:D, 3PH0:A, 3S6P:G, 4HP3:C, 4LN0:C, 4M70:R, 4UG3:C, 1LWU:A, 1M93:A, 2DB7:A, 2NR5:A, 2P58:A,	d1iiea_, d2db7a1, d2nr5a1, 1iieA00,
4	HHHH	Hr.0.0-0.0-0	True	3H87:C, 3V9R:A, 3V9R:C, 4Q2U:A, 4Q2U:C, 4Q2U:E, 4Q2U:G, 4Q2U:I, 4Q2U:K, 4Q2U:M, 4Q2U:O, 5FD3:A, 5FD3:B,	d1ef1c_, 1y9bA00,
4	HHHH	0.0.Hr-0.Hr-0	True	3X39:A, 5LUT:B, 5LUT:F, 5LUT:G, 5LUT:I, 2O8X:A,	d1szpa1, d2i1qa1,
4	HHHH	Hr.0.Ha-Hr.0-0	False		d2bcqa2,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3AJI	A	228	26S proteasome non-ATPase regulatory subunit 10	View
3AJI	C	228	26S proteasome non-ATPase regulatory subunit 10	View
3APZ	B	299	Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial	View
3B95	A	236	Histone-lysine N-methyltransferase EHMT1	View
3BJX	A	303	Halocarboxylic acid dehalogenase DehI	View
3BJX	C	288	Halocarboxylic acid dehalogenase DehI	View
3BJX	D	302	Halocarboxylic acid dehalogenase DehI	View
3CDL	A	182	Transcriptional regulator AefR	View
3CHH	A	300	Putative N-oxidase	View
3CHH	B	299	Putative N-oxidase	View
3EBB	A	261	Phospholipase A-2-activating protein	View
3EBB	C	261	Phospholipase A-2-activating protein	View
3EU9	A	232	Palmitoyltransferase ZDHHC17	View
3EU9	B	227	Palmitoyltransferase ZDHHC17	View
3EU9	C	226	Palmitoyltransferase ZDHHC17	View
3H9P	A	221	Uncharacterized protein	View
3H9P	B	216	Uncharacterized protein	View
3H9P	C	213	Uncharacterized protein	View
3KAE	A	225	POSSIBLE PROTEIN OF NUCLEAR SCAFFOLD	View
3KAE	B	231	POSSIBLE PROTEIN OF NUCLEAR SCAFFOLD	View
3KAE	C	231	POSSIBLE PROTEIN OF NUCLEAR SCAFFOLD	View
3KAE	D	227	POSSIBLE PROTEIN OF NUCLEAR SCAFFOLD	View
3KCU	A	252	Probable formate transporter 1	View
3KKD	C	201	Probable transcriptional regulator	View
3LJX	A	248	MmoQ	View
3LOM	B	285	Geranyltranstransferase	View
3O2S	A	311	Symplekin	View
3O2T	A	304	Symplekin	View
3O5T	A	295	Dinitrogenase reductase activacting glicohydrolase	View
3QML	D	273	Nucleotide exchange factor SIL1	View
3QXL	A	245	Ras-specific guanine nucleotide-releasing factor RalGPS1	View
3QXL	B	244	Ras-specific guanine nucleotide-releasing factor RalGPS1	View
3RV1	B	238	Putative uncharacterized protein	View
3TC1	A	289	Octaprenyl-diphosphate synthase (IspB)	View
3TT9	A	233	Plakophilin-2	View
3U52	C	318	Phenol hydroxylase component phL	View
3WE9	A	247	Putative phytoene/squalene synthase YisP	View
4CEM	B	306	Regulator of nonsense transcripts 2	View
4CO6	C	190	Nucleoprotein	View
4CSF	B	249	Nucleoprotein	View
4CSF	D	249	Nucleoprotein	View
4CSF	F	249	Nucleoprotein	View
4CSF	H	249	Nucleoprotein	View
4CSF	I	249	Nucleoprotein	View
4CSF	K	251	Nucleoprotein	View
4CSF	M	248	Nucleoprotein	View
4CSF	O	248	Nucleoprotein	View
4DJN	A	279	Ribonucleoside-diphosphate reductase subunit M2 B	View
4DJN	B	279	Ribonucleoside-diphosphate reductase subunit M2 B	View
4DR0	A	290	Ribonucleoside-diphosphate reductase subunit beta	View
4DR0	B	291	Ribonucleoside-diphosphate reductase subunit beta	View
4F6U	B	267	Cyclin-C	View
4FN6	C	223	Aminopyrimidine aminohydrolase	View
4FN6	D	224	Aminopyrimidine aminohydrolase	View
4FP9	B	245	Transcription termination factor 4, mitochondrial	View
4FP9	E	245	Transcription termination factor 4, mitochondrial	View
4FP9	G	245	Transcription termination factor 4, mitochondrial	View
4FP9	H	245	Transcription termination factor 4, mitochondrial	View
4FZV	B	233	Transcription termination factor 4, mitochondrial	View
4HBD	A	245	KN motif and ankyrin repeat domain-containing protein 2	View
4HTE	A	335	OriT relaxase Nes	View
4I1A	A	274	Response regulator aspartate phosphatase I	View
4IMI	C	309	Symplekin	View
4J4W	A	243	Nucleocapsid	View
4J4Y	B	248	NP protein	View
4K92	A	241	CLIP-associating protein 1	View
4KKM	A	278	Polyprenyl synthetase	View
4L7M	A	255	Uncharacterized protein	View
4L7M	B	255	Uncharacterized protein	View
4LQX	A	288	Uncharacterized protein	View
4LQX	B	294	Uncharacterized protein	View
4M1H	D	334	Ribonucleoside-diphosphate reductase subunit beta	View
4MC3	A	287	Putative sesquiterpene cyclase	View
4N5Q	A	249	Transient receptor potential cation channel subfamily V member 3	View
4N5Q	B	254	Transient receptor potential cation channel subfamily V member 3	View
4TQ3	A	283	Bacteriochlorophyll synthase, 33 kDa subunit	View
4TQ3	B	284	Bacteriochlorophyll synthase, 33 kDa subunit	View
4TQ3	C	284	Bacteriochlorophyll synthase, 33 kDa subunit	View
4TQ3	D	284	Bacteriochlorophyll synthase, 33 kDa subunit	View
4UUC	A	221	Ankyrin repeat and SOCS box protein 11	View
4WID	A	347	RhUL123	View
4WID	B	345	RhUL123	View
5A0J	A	311	Labdane-related diterpene synthase	View
5ERN	A	286	Fusicoccadiene synthase	View
5FHP	A	198	NicR	View
5FHP	B	197	NicR	View
5FHP	C	200	NicR	View
5FHP	D	192	NicR	View
5FHP	E	197	NicR	View
5FHP	F	192	NicR	View
5H5M	B	349	Alpha-catenin-like protein hmp-1	View
5I20	A	287	Uncharacterized protein	View
5I20	B	279	Uncharacterized protein	View
5I20	C	282	Uncharacterized protein	View
5I20	E	291	Uncharacterized protein	View
5ICP	B	267	Cyclin-C	View
5IDN	B	267	Cyclin-C	View
5IDP	B	268	Cyclin-C	View
5JJ6	B	333	Adenosine monophosphate-protein transferase FICD homolog	View
5KLB	A	267	Ion transport protein	View
5LWE	B	285	C-C chemokine receptor type 9	View
5T2X	A	255	Uncharacterized protein	View
5T2X	B	254	Uncharacterized protein	View
5VJC	B	246	Mini spindles, isoform C	View
5X6N	A	274	Duffy receptor alpha form	View
1F5Q	B	247	V-cyclin	View
1PU6	A	216	Endonuclease III	View
1UOH	A	223	26S proteasome non-ATPase regulatory subunit 10	View
1UZR	A	282	Ribonucleoside-diphosphate reductase subunit beta nrdF2	View
1V9D	A	308	Protein diaphanous homolog 1	View
1XNF	A	256	Lipoprotein NlpI	View
1XQO	A	253	N-glycosylase/DNA lyase	View
2HO1	A	219	Type 4 fimbrial biogenesis protein PilF	View
2INC	B	322	Toluene, o-xylene monooxygenase oxygenase subunit	View
2NOX	A	261	Tryptophan 2,3-dioxygenase	View
2PNN	A	245	Transient receptor potential cation channel subfamily V member 1	View
2QDJ	A	254	Retinoblastoma-associated protein	View
2QZC	A	206	Transcriptional activator (TenA-1)	View

Topology view of query protein [ProLego results]

4HD1 : A

Topology Information