Protein Detail

Protein Information

PDBId & Chain	4GAM : L
Molecule	Methane monooxygenase component A beta chain
Residues	388
Sequence
SSE Sequence^*(16)	`HHHHHHHHHHHHHHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.0.0.0.0.Ha.0.Hr.0.0.0.Hr.0.0.Hr-0.0.0.0.Ha.0.0.0.0.0.Hr.0.0.Hp-0.0.0.0.Hr.0.Hr.0.0.0.0.Ha.0-0.0.Hp.0.Hp.Hr.0.0.0.Hr.0.0-0.Hr.0.0.0.0.0.0.Ha.0.0-0.0.0.0.0.0.Ha.0.0.0-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.Ha.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4GAM_L

Protein Id: 4GAM_L

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4GAM_L

Protein Id: 4GAM_L

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHH	0.Ha-Ha	True	3FXD:D, 3P8C:F, 3R84:A, 3R84:C, 3R84:E, 3R84:G, 3R84:I, 3R84:K, 3R84:M, 3R84:O, 3R84:Q, 3R84:S, 3R84:U, 3R84:W, 3ZK1:A, 3ZK1:B, 3ZK1:C, 3ZK1:F, 3ZK1:G, 3ZK1:I, 3ZK1:M, 3ZK1:N, 3ZK1:O, 3ZK1:S, 4BEM:A, 4BEM:B, 4BEM:C, 4BEM:D, 4BEM:E, 4BEM:F, 4BEM:G, 4BEM:H, 4BEM:I, 4F4S:A, 4F4S:B, 4F4S:C, 4F4S:D, 4F4S:E, 4F4S:K, 4F4S:L, 4F4S:M, 4F4S:N, 4F4S:O, 4MH6:A, 5D50:H, 5D50:P, 5J9T:D, 5J9T:H, 5J9T:L, 1SKV:A, 2GUZ:A, 2WGM:A, 5UN5:C,	d1skva_, 1skvA00,
3	HHH	Ha.0-0	False	3BPJ:A, 3BPJ:B, 3BPJ:C, 3BPJ:D, 3MTU:E, 3MTU:F, 4CLQ:B, 4HFX:A, 4IAO:C, 4IAO:D, 4OM3:A, 4X86:A, 4YTW:A, 4YTW:C, 5FD9:A, 1YKH:B, 2B9C:A,	d1ykhb1, d2bskb1,
3	HHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3	HHH	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3	HHH	0.Hr-Hr	True	3E7L:B, 4CGE:A, 4GHJ:A, 4OW1:B, 4OW1:E, 4OW1:W, 4OW1:X, 5LUP:A, 5LUP:B, 5LUP:C, 5LUP:D, 5LUP:E, 5LUP:F, 5LUP:G, 5LUP:H, 5LUP:I, 5LUP:J, 5LUP:K, 5LUP:L, 5LUS:A, 5LUS:B, 5LUS:C, 5LUS:D, 5LUS:E, 5LUS:F, 5LUS:G, 5LUS:H, 5LUS:I, 5LUS:J, 1A0A:A, 1HYP:A, 2OYY:A, 2VKL:A, 5HUB:A,	d1a0aa_, d1hypa_, d3cjrb1, 1a0aA00, 1hypA00,
3	HHH	0.Hr-Hp	False	4F3F:C, 4I6O:A, 4Z8L:B,
4	HHHH	0.0.Ha-0.Ha-0	False	5UNI:A,
4	HHHH	0.Ha.0-Ha.0-Hr	False	3ZK1:D, 3ZK1:H, 3ZK1:L, 3ZK1:P,
4	HHHH	Ha.0.Hr-0.0-0	False	3ERM:E,
4	HHHH	0.Hr.0-0.0-Hr	False	3KR3:D,
4	HHHH	Hr.0.0-0.0-0	True	3H87:C, 3V9R:A, 3V9R:C, 4Q2U:A, 4Q2U:C, 4Q2U:E, 4Q2U:G, 4Q2U:I, 4Q2U:K, 4Q2U:M, 4Q2U:O, 5FD3:A, 5FD3:B,	d1ef1c_, 1y9bA00,
4	HHHH	0.0.Hr-0.Hr-0	True	3X39:A, 5LUT:B, 5LUT:F, 5LUT:G, 5LUT:I, 2O8X:A,	d1szpa1, d2i1qa1,
4	HHHH	0.Hr.0-Hr.0-0	True	4OW1:A, 4OW1:S, 4OW1:T, 4OW1:U,	d1pbya1,
4	HHHH	Hr.0.0-0.0-Ha	False

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XES	B	230	Protein PAT1 homolog 1	View
3B9W	A	362	Ammonium transporter family	View
3BJC	A	311	cGMP-specific 3',5'-cyclic phosphodiesterase	View
3BJD	A	317	Uncharacterized protein	View
3BJD	C	320	Uncharacterized protein	View
3CKD	B	239	Probable E3 ubiquitin-protein ligase ipaH7.8	View
3E33	A	323	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	View
3E6U	A	409	LanC-like protein 1	View
3E6U	B	401	LanC-like protein 1	View
3E6U	C	409	LanC-like protein 1	View
3I7A	A	272	Putative signal transduction protein	View
3KB9	A	340	Epi-isozizaene synthase	View
3M1T	A	261	Putative signal transduction protein	View
3MMI	B	346	Myosin-4	View
3PKO	B	310	Geranylgeranyl pyrophosphate synthase	View
3Q15	B	332	Response regulator aspartate phosphatase H	View
3RMG	A	299	Octaprenyl-diphosphate synthase	View
3TJZ	B	264	Coatomer subunit gamma-1	View
3TJZ	E	260	Coatomer subunit gamma-1	View
3U3W	B	280	Transcriptional regulator	View
3ZUX	A	308	Transporter	View
4A64	A	348	Cullin-4B	View
4A64	B	345	Cullin-4B	View
4A64	C	333	Cullin-4B	View
4A64	D	320	Cullin-4B	View
4CRU	B	270	Cell differentiation protein RCD1 homolog	View
4D4Z	A	288	Deoxyhypusine hydroxylase	View
4D4Z	B	290	Deoxyhypusine hydroxylase	View
4EQF	A	281	PEX5-related protein	View
4EZC	A	345	Urea transporter 1	View
4EZC	B	346	Urea transporter 1	View
4EZC	C	346	Urea transporter 1	View
4GAM	B	388	Methane monooxygenase component A beta chain	View
4GAM	G	388	Methane monooxygenase component A beta chain	View
4GAM	Q	388	Methane monooxygenase component A beta chain	View
4HL4	A	280	TBC1 domain family member 20	View
4IAR	A	379	5-hydroxytryptamine receptor 1B	View
4J7O	A	329	Putative surface cell antigen sca2	View
4KWD	A	304	Aristolochene synthase	View
4KYO	B	286	Peroxisomal targeting signal 1 receptor	View
4KYO	D	285	Peroxisomal targeting signal 1 receptor	View
4LL6	A	346	Myosin-4	View
4N7W	A	307	Sodium Bile acid symporter family protein	View
4N7W	B	304	Sodium Bile acid symporter family protein	View
4P40	A	285	Type III secretion regulator YopN/LcrE/InvE/MxiC	View
4U04	B	324	Adenosine monophosphate-protein transferase FICD	View
4XB9	A	285	Ribonucleotide reductase small subunit	View
4XNJ	A	466	Di-or tripeptide:H+ symporter	View
4ZP0	A	392	Multidrug transporter MdfA	View
5BZ3	A	384	Na(+)/H(+) antiporter	View
5C9S	B	276	rRNA biogenesis protein RRP5	View
5FD4	A	309	Predicted transcriptional regulator	View
5HAS	C	280	Sec7	View
5HJQ	A	284	Skywalker, isoform J	View
5JJX	A	299	Squamous cell carcinoma antigen recognized by T-cells 3	View
5KLB	C	267	Ion transport protein	View
5L7S	A	267	Secreted RxLR effector peptide protein, putative	View
5TIA	B	334	Tryptophan 2,3-dioxygenase	View
5TIA	C	323	Tryptophan 2,3-dioxygenase	View
5TIA	D	349	Tryptophan 2,3-dioxygenase	View
5TQB	B	331	Putative uncharacterized protein	View
5U00	C	339	cGMP-dependent 3',5'-cyclic phosphodiesterase	View
5UFK	A	256	effector protein SidK	View
1FKM	A	314	GTPase-activating protein GYP1	View
1JK0	A	334	Ribonucleoside-diphosphate reductase small chain 1	View
1MHY	B	383	Methane monooxygenase component A beta chain	View
1S70	B	291	Protein phosphatase 1 regulatory subunit 12A	View
1W9C	A	321	Exportin-1	View
2DGJ	A	244	Extracellular matrix-binding protein EbhA	View
2F6H	X	390	Myosin-2	View
2FEF	A	280	Uncharacterized protein	View
2FTZ	A	241	Octaprenyl-diphosphate synthase / Dimethylallyltransferase / Geranyltranstransferase (Farnesyldiphosphate synthase) / Geranylgeranyl pyrophosphate synthetase	View
2IFU	A	265	Zgc:110177 protein	View
2QI9	A	313	Vitamin B12 import system permease protein BtuC	View
2R0Y	A	277	Chromatin structure-remodeling complex subunit RSC4	View

Topology view of query protein [ProLego results]

4GAM : L

Topology Information