Protein Detail

Protein Information

PDBId & Chain	4FFU : A
Molecule	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN
Residues	151
Sequence
SSE Sequence^*(9)	`EEHHHEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ca.0.0.Ca.0.Ea.Ea-0.0.0.0.Cp.Ep.Ep-0.Ca.0.0.0.Ea-0.0.0.0.Cp-0.Ea.0.0-Ea.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4FFU_A

Protein Id: 4FFU_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4FFU_A

Protein Id: 4FFU_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3EMI	A	110	Hia	View
3F1P	A	114	Endothelial PAS domain-containing protein 1	View
3IFU	A	175	Non-structural protein	View
4FFU	B	146	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	C	148	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	E	149	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	F	143	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	G	143	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	H	152	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	I	153	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	J	141	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	K	133	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4FFU	L	149	Putative MaoC-like (Monoamine oxidase-like) protein, similar to NodN	View
4H6J	A	106	Hypoxia-inducible factor 1-alpha	View
4RLJ	A	144	UPF0336 protein Rv0635	View
4RV2	A	135	UPF0336 protein MSMEG_1340	View
4WN5	A	108	Hypoxia-inducible factor 3-alpha	View
4WN5	B	105	Hypoxia-inducible factor 3-alpha	View
5F68	A	103	Protein cycle	View

Topology view of query protein [ProLego results]

4FFU : A

Topology Information