ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain4F62 : A
MoleculeGeranyltranstransferase
Residues267
Sequence
SSE Sequence*(13) HHHHHHHHHHHHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
0.0.Ha.0.Ha.Ha.Hp.Hr.0.Ha.Ha.Ha-Hr.Hr.0.Ha.0.0.0.0.Hr.0.Hp-Hr.Hr.0.Hp.0.0.Ha.0.Hr.0-0.Hr.0.Hp.0.0.0.0.0-Hr.0.0.0.0.0.0.0-0.0.0.Ha.0.0.0-0.0.Hp.0.0.0-0.0.Ha.0.0-0.0.0.0-0.0.Ha-0.0-Hr

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4F62_A
shapeImage
Protein Id: 4F62_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4F62_A
shapeImage
Protein Id: 4F62_A

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHH 0.0-Hr False 4EOT:A, 4FL4:J, 1Q7L:B, d2auwa1,
3 HHH 0.Ha-Hr True 3A5T:A, 3GWK:C, 3OW2:U, 3TGU:H, 3TGU:U, 4EOT:B, 4ICG:C, 4ICG:D, 4U6U:A, 4U6U:C, 4ZMK:A, 5DM6:V, 1FS1:A, 1PPJ:H, 1VQO:V, 2GUZ:B, 5GMU:A, d1fs1a1, d1k1va_, d1ppjh_, d2d8da1, d2izva1, 1fs1A00, 1k1vA00, 1ldkE00, 1pp9H00,
3 HHH Ha.0-0 False 3BPJ:A, 3BPJ:B, 3BPJ:C, 3BPJ:D, 3MTU:E, 3MTU:F, 4CLQ:B, 4HFX:A, 4IAO:C, 4IAO:D, 4OM3:A, 4X86:A, 4YTW:A, 4YTW:C, 5FD9:A, 1YKH:B, 2B9C:A, d1ykhb1, d2bskb1,
3 HHH 0.Ha-Ha True 3FXD:D, 3P8C:F, 3R84:A, 3R84:C, 3R84:E, 3R84:G, 3R84:I, 3R84:K, 3R84:M, 3R84:O, 3R84:Q, 3R84:S, 3R84:U, 3R84:W, 3ZK1:A, 3ZK1:B, 3ZK1:C, 3ZK1:F, 3ZK1:G, 3ZK1:I, 3ZK1:M, 3ZK1:N, 3ZK1:O, 3ZK1:S, 4BEM:A, 4BEM:B, 4BEM:C, 4BEM:D, 4BEM:E, 4BEM:F, 4BEM:G, 4BEM:H, 4BEM:I, 4F4S:A, 4F4S:B, 4F4S:C, 4F4S:D, 4F4S:E, 4F4S:K, 4F4S:L, 4F4S:M, 4F4S:N, 4F4S:O, 4MH6:A, 5D50:H, 5D50:P, 5J9T:D, 5J9T:H, 5J9T:L, 1SKV:A, 2GUZ:A, 2WGM:A, 5UN5:C, d1skva_, 1skvA00,
3 HHH Ha.Ha-0 True 3RKO:A, 3RKO:E, 3RKO:G, 3RKO:K, 3SHG:B, 3THF:A, 3THF:B, 3U0C:A, 3U0C:B, 3ZE3:E, 4ADZ:A, 4ADZ:B, 4RP3:A, 4RP3:B, 4XA3:A, 5EU0:B, 5FMN:A, 5FMN:B, 5LCY:A, 5LCY:B, 5LCY:C, 5LCY:D, 5LSI:D, 5SZH:A, 5SZJ:B, 1UPT:B, 2HH7:A, 2P64:A, d1t50a_, d1uptb_, d2vv5a3, 1t50A00, 1uptF00,
3 HHH Ha.Hp-0 False 3AAI:B, 3AAI:D, 1XOU:B, d1ud0a_, d1xoub_,
3 HHH Hp.Hr-0 False 3HLS:C, 3HLS:G, 3NRT:C, 3NRT:F, 5DM6:2, 5LUT:A, 5LUT:H,
3 HHH Hr.0-0 True 2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A, d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3 HHH Ha.Ha-Hp True 2WY8:Q, 2XF7:A, 2XF7:B, 2XF7:C, 2XF7:D, 2XF7:E, 2XF7:F, 2XVT:A, 2XVT:B, 2XVT:C, 2XVT:D, 2XVT:E, 2XVT:F, 3A8Y:C, 3A8Y:D, 3BBZ:A, 3BBZ:B, 3EAB:A, 3EAB:B, 3EAB:C, 3EAB:D, 3EAB:E, 3EAB:F, 3GI7:A, 3GI7:B, 3GN4:A, 3L8R:A, 3L8R:B, 3L8R:C, 3L8R:D, 3L8R:E, 3L8R:F, 3L8R:G, 3L8R:H, 3LOF:A, 3LOF:B, 3LOF:C, 3LOF:D, 3LOF:E, 3LOF:F, 3MQ1:A, 3MQ1:B, 3MQ1:C, 3MQ1:D, 3MQ1:E, 3MQ1:F, 3MXZ:A, 3MZW:B, 3OVU:A, 3PH0:C, 3PH0:D, 3RGU:A, 3RGU:B, 3RGU:C, 3RGU:D, 3T47:A, 3UUL:A, 3UUL:B, 3UUN:A, 3UUN:B, 3ZE3:B, 3ZE3:C, 3ZE3:F, 4A5X:A, 4A5X:B, 4CC9:B, 4CQI:A, 4FM3:A, 4FM3:B, 4FM3:C, 4FM3:D, 4FZP:A, 4FZP:B, 4H10:A, 4HKZ:H, 4HWC:A, 4HWC:B, 4HWC:C, 4HWC:D, 4HWC:E, 4HWC:F, 4HWD:A, 4HWD:B, 4HWD:D, 4HWH:A, 4HWH:B, 4HWH:C, 4HWH:D, 4HWH:E, 4K12:B, 4KBQ:C, 4KBQ:D, 4MBQ:A, 4MBQ:B, 4MBQ:C, 4MBQ:D, 4MBQ:E, 4MBQ:F, 4NPD:A, 4NTW:C, 4PS2:A, 4TX5:A, 4TX5:B, 4U7I:A, 4U7Y:A, 4UI1:C, 4UI1:D, 4Z8L:E, 4ZNC:A, 4ZNC:B, 4ZNC:C, 5DJT:B, 5FVK:A, 5FVK:B, 5JSN:B, 5JSN:D, 5LB7:B, 1EZ3:A, 1LJ2:A, 1LP1:A, 1WRD:A, 1Z8U:A, 2C5K:T, 2E2A:A, 2ERL:A, 2FCW:A, 2FZT:A, 2GOM:A, 2J5Y:A, 2NOJ:B, 2V6Y:A, 2W2U:A, 3LF9:A, 3LG7:A, 3LHP:S, 3QWO:C, 3S1K:A, 4IOI:H, 4L8I:A, 4OYD:B, 5DJU:B, 5EFW:B, 5GNA:A, 5J0L:A, 5JSB:B, d1chua1, d1cuna2, d1ez3a_, d1fpoa2, d1g73a_, d1gpja1, d1gvna_, d1hcia4, d1hf8a1, d1iura_, d1lvfa_, d1m62a_, d1nrea_, d1nu9c1, d1o3xa_, d1o7d.1, d1qsda_, d1r4ga_, d1s35a1, d1s35a2, d1u5pa1, d1u5pa2, d1uura1, d1vcta1, d1wfda_, d1wrda1, d1x4oa1, d1x4pa1, d1x9ba_, d1xvha2, d1z8ua_, d2cpta1, d2crba1, d2e2aa_, d2erla_, d2fcwa1, d2fzta1, d2goma1, d2j5ya_, d2pmra1, d2qalt1, d2uubt1, d3bvua1, d3l8ra_, d3ldqb_, d3qwoc_, 1deeG00, 1deeG00, 1ez3A00, 1g73A00, 1gvnC00, 1hciA04, 1lj2A00, 1lp1B00, 1lreA00, 1lvfB00, 1m62A00, 1o3xA00, 1qsdA00, 1r73A00, 1t6oA00, 1wfdA00, 1x9bA00, 2e2aA00, 2erlA00, 2vqeT00,
4 HHHH Ha.0.Ha-0.Ha-0 False 4M1P:A,
4 HHHH Ha.Ha.Ha-0.Hp-0 True 1HXI:A, 4JW2:A, d1hxia_, d1k1xa1, 1hxiA00,
Protein In ProLegoDB with identical/similar Topology