Protein Detail

Protein Information

PDBId & Chain	2YJL : B
Molecule	Exoenzyme S synthesis protein B
Residues	113
Sequence
SSE Sequence^*(9)	`EEEEHEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Ea.Ca.0.Ea.Ea.0-0.Ep.Ca.Ea.0.Ep.Ea-Ea.0.Ep.0.0.0-Cp.Ea.0.Ea.0-Ep.Ep.0.0-0.0.0-Ep.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 2YJL_B

Protein Id: 2YJL_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 2YJL_B

Protein Id: 2YJL_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3	EEH	Ea.Ca-Ca	False	5JBT:Y,
3	EHE	Ca.0-Ea	False		d1sddb1, d1ugla_, d1y7ma2, 1uglA00,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
4	EEEE	Ea.Ea.Ea-0.Ep-Ea	True	3TBN:A, 4BV4:L, 4LXR:K, 5AOQ:L, 5AOQ:M,	d1jmab2, 1ccvA00, 1ccvA00,
4	HEEE	0.Ea.Ea-0.Ep-0	True	3R45:C, 3UL5:A, 3UL5:B, 3UL5:D, 4TX4:A, 4TX4:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YJL	A	108	Exoenzyme S synthesis protein B	View
2YJL	C	106	Exoenzyme S synthesis protein B	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3G74	A	82	Stage V sporulation protein AA	View
3G74	E	87	Stage V sporulation protein AA	View
3HEI	B	132	Ephrin-A1	View
3HEI	D	132	Ephrin-A1	View
3HEI	F	132	Ephrin-A1	View
3HEI	H	132	Ephrin-A1	View
3HEI	J	132	Ephrin-A1	View
3HEI	L	132	Ephrin-A1	View
3HEI	N	132	Ephrin-A1	View
3HEI	P	132	Ephrin-A1	View
3LW3	A	121	HP0420 homologue	View
3LW3	B	137	HP0420 homologue	View
3OMS	A	124	PhnB protein	View
3OWR	A	126	Uncharacterized protein	View
3Q2C	A	96	Leukocyte immunoglobulin-like receptor subfamily A member 3	View
3S35	X	112	Vascular endothelial growth factor receptor 2	View
3ULL	A	106	Single-stranded DNA-binding protein, mitochondrial	View
3ULL	B	103	Single-stranded DNA-binding protein, mitochondrial	View
4C2M	I	124	DNA-directed RNA polymerase I subunit RPA12	View
4C2M	X	119	DNA-directed RNA polymerase I subunit RPA12	View
4CSB	A	113	Virulence associated protein VapD	View
4CV7	A	111	Virulence associated protein VapB	View
4L0P	B	139	Ephrin-A5	View
4OLE	A	118	Next to BRCA1 gene 1 protein	View
4OLE	B	116	Next to BRCA1 gene 1 protein	View
4OLE	D	115	Next to BRCA1 gene 1 protein	View
4UE0	A	115	Fiber	View
4UE0	B	115	Fiber	View
4UE0	C	115	Fiber	View
4UMI	A	114	Fiber protein	View
5AEO	A	110	Virulence associated protein VapG	View
5AEO	B	110	Virulence associated protein VapG	View
5DM6	O	94	50S ribosomal protein L21	View
1A1X	A	106	Protein p13 MTCP-1	View
1QHQ	A	139	Auracyanin-B	View
1YC6	1	154	Capsid protein	View
2AAN	A	123	Auracyanin-A	View
2HAZ	A	104	Neural cell adhesion molecule 1	View

Topology view of query protein [ProLego results]

2YJL : B

Topology Information