Protein Detail

Protein Information

PDBId & Chain	3QZM : B
Molecule	Iron-regulated surface determinant protein A
Residues	123
Sequence
SSE Sequence^*(10)	`EEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.0.Ea.Ea.Ea.0.Ea.Ea.Ea-Ea.Ep.0.0.Ea.Ea.0.0-0.0.0.0.Ep.0.0-0.0.0.Ea.Ea.0-0.0.0.0.Ep-0.0.0.Ea-0.0.0-0.Ea-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3QZM_B

Protein Id: 3QZM_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3QZM_B

Protein Id: 3QZM_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.0-Ea	True	3S2R:A, 3S2R:B, 4EZF:A, 4EZF:B, 4OOA:A, 4OOA:B, 4OOA:C, 4OOA:D, 4OOA:E, 4OOA:F, 4R10:B,	d1clvi_, d1k91a_, 2o9uX00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3	EEE	0.Ea-Ea	False	3QTE:A, 3QTE:B, 3QTE:C, 5J4S:B, 2J5L:A,	d1bdsa_, d1ut3a_, d2j4wd1, d2nn6i2, 1bdsA00, 1bdsA00,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3QZM	A	124	Iron-regulated surface determinant protein A	View
d3qzma_	--	124	u'Iron-regulated surface determinant protein A'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X4J	A	109	Putative uncharacterized protein	View
2X5P	A	104	Fibronectin binding protein	View
2XR4	A	116	Lectin	View
2XR4	B	116	Lectin	View
2XT2	A	197	McbG-like protein	View
2XT2	B	194	McbG-like protein	View
2Y6T	E	141	Ecotin	View
2Y6T	F	142	Ecotin	View
2Y6T	G	140	Ecotin	View
2Y6T	H	138	Ecotin	View
2YWY	A	113	New antigen receptor variable domain	View
2YWY	B	103	New antigen receptor variable domain	View
2YWY	C	113	New antigen receptor variable domain	View
2YWY	D	103	New antigen receptor variable domain	View
2YWZ	A	111	New antigen receptor variable domain	View
2YZ1	A	114	Tyrosine-protein phosphatase non-receptor type substrate 1	View
2YZ1	B	114	Tyrosine-protein phosphatase non-receptor type substrate 1	View
2YZ8	A	89	Obscurin	View
2ZEX	B	145	S-layer associated multidomain endoglucanase	View
2ZJR	A	240	50S ribosomal protein L2	View
2ZOU	A	135	Spondin-1	View
2ZOU	B	140	Spondin-1	View
3AIH	A	110	Protein OS-9	View
3AIH	B	111	Protein OS-9	View
3BFO	A	85	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	View
3BFO	B	85	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	View
3BFO	C	85	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	View
3BFO	D	85	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	View
3BN6	A	158	Lactadherin	View
3BZF	D	97	Beta-2-microglobulin	View
3C0D	C	103	Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein	View
3CAF	A	100	Fibroblast growth factor receptor 2	View
3CNC	A	196	Serotype 16 fiber	View
3CNC	C	196	Serotype 16 fiber	View
3CNC	D	196	Serotype 16 fiber	View
3CNC	E	196	Serotype 16 fiber	View
3CNC	F	196	Serotype 16 fiber	View
3CX5	V	107		View
3DJM	A	110	Uncharacterized protein	View
3DJM	B	111	Uncharacterized protein	View
3DJM	C	108	Uncharacterized protein	View
3DJM	D	109	Uncharacterized protein	View
3DJM	E	108	Uncharacterized protein	View
3EJH	A	91	Fibronectin	View
3EJH	B	87	Fibronectin	View
3ES4	A	112	Uncharacterized protein	View
3ES4	B	112	Uncharacterized protein	View
3F2Z	A	148	Uncharacterized protein	View
3G7G	C	144	UPF0311 protein CA_C3321	View
3G7G	E	135	UPF0311 protein CA_C3321	View
3GCE	A	104	Ferredoxin component of carbazole 1,9a-dioxygenase	View
3H8Z	A	110	Fragile X mental retardation syndrome-related protein 2	View
3HB3	C	118	Ig heavy chain V region 5-84	View
3HB3	D	108	Ig kappa chain V-V region MOPC 149	View
3HNX	A	108	Cyanovirin-N homolog	View
3HQX	A	104	UPF0345 protein ACIAD0356	View
3IX0	A	87	Beta-microseminoprotein	View
3KFD	E	108	TGF-beta receptor type-2	View
3KFD	G	109	TGF-beta receptor type-2	View
3KFD	H	106	TGF-beta receptor type-2	View
3KGR	A	99	Leukocyte-associated immunoglobulin-like receptor 1	View
3KGR	B	97	Leukocyte-associated immunoglobulin-like receptor 1	View
3KGR	C	99	Leukocyte-associated immunoglobulin-like receptor 1	View
3KNB	B	96	Obscurin-like protein 1	View
3KT9	A	102	Aprataxin	View
3LHC	A	100	Cyanovirin-N	View
3LX7	A	143	SAGA-associated factor 29	View
3M45	A	101	Cell adhesion molecule 2	View
3M45	B	101	Cell adhesion molecule 2	View
3M45	D	97	Cell adhesion molecule 2	View
3MEA	A	162	SAGA-associated factor 29	View
3MNM	A	109	ADP-ribosylation factor-binding protein GGA2	View
3MNM	B	109	ADP-ribosylation factor-binding protein GGA2	View
3MNM	C	107	ADP-ribosylation factor-binding protein GGA2	View
3O0L	B	106	Uncharacterized protein	View
3O8V	A	102	Fragile X mental retardation syndrome-related protein 1	View
3OBL	A	132	Lectin	View
3OBL	B	132	Lectin	View
3OSK	A	121	Cytotoxic T-lymphocyte protein 4	View
3OSK	B	123	Cytotoxic T-lymphocyte protein 4	View
3P43	A	124	Uncharacterized protein	View
3PNR	B	129	Putative uncharacterized protein	View
3PQH	A	107	Phi92_gp138	View
3PQH	B	107	Phi92_gp138	View
3RG1	C	138	Uncharacterized protein	View
3RG1	D	136	Uncharacterized protein	View
3RG1	L	138	Uncharacterized protein	View
3RG1	O	138	Uncharacterized protein	View
3RG1	P	135	Uncharacterized protein	View
3RTL	A	114	Iron-regulated surface determinant protein B	View
3SZ6	A	116	Iron Transport-associated domain protein	View
3SZ6	B	116	Iron Transport-associated domain protein	View
3UDW	A	105	T-cell immunoreceptor with Ig and ITIM domains	View
3UZQ	B	95	Genome polyprotein	View
3VQ2	C	135	Lymphocyte antigen 96	View
3VQ2	D	135	Lymphocyte antigen 96	View
3VTT	A	100	Genome polyprotein	View
3VTT	B	104	Genome polyprotein	View
3WIT	A	63	Uncharacterized protein	View
3WVT	A	102	Uncharacterized protein	View
3ZHD	A	120	Ig heavy chain V-III region 23	View
3ZHD	B	120	Ig heavy chain V-III region 23	View
3ZJA	A	114	Uncharacterized protein	View
4A0E	A	108	Yop proteins translocation protein D homolog	View
4A0E	B	108	Yop proteins translocation protein D homolog	View
4AAY	B	132	AroB	View
4AAY	D	132	AroB	View
4AAY	F	132	AroB	View
4AAY	H	132	AroB	View
4AGR	A	140	Galectin	View
4AGR	B	144	Galectin	View
4AGR	C	144	Galectin	View
4AGR	D	144	Galectin	View
4AIV	A	113	Probable nitrite reductase [NAD(P)H] small subunit NirD	View
4B5Q	A	217	Glycoside hydrolase family 61 protein D	View
4B5Q	B	217	Glycoside hydrolase family 61 protein D	View
4BDX	A	83	Coagulation factor XII	View
4BSP	A	88	R-spondin-1	View
4BV1	D	109	NEQ011	View
4CE8	B	114	Fucose-binding lectin PA-IIL	View
4CJM	A	129	Fibroblast growth factor 18	View
4CJM	B	128	Fibroblast growth factor 18	View
4CJM	C	128	Fibroblast growth factor 18	View
4CJM	D	129	Fibroblast growth factor 18	View
4D90	A	127	EGF-like repeat and discoidin I-like domain-containing protein 3	View
4DB5	A	121	Uncharacterized protein	View
4EAX	A	108	Beta-nerve growth factor	View
4F2M	E	148	Spike protein	View
4F2M	F	148	Spike protein	View
4F3J	A	143	Complement C1q tumor necrosis factor-related protein 5	View
4FBO	A	132	Uncharacterized protein	View
4FBO	B	132	Uncharacterized protein	View
4FHQ	A	101	Tumor necrosis factor receptor superfamily member 14	View
4G4F	A	114	Tumor necrosis factor ligand superfamily member 18	View
4G8A	C	140	Lymphocyte antigen 96	View
4G8A	D	140	Lymphocyte antigen 96	View
4GOS	A	115	V-set domain-containing T-cell activation inhibitor 1	View
4I9X	D	106	Tumor necrosis factor receptor superfamily member 10B	View
4II1	A	136	Zinc finger CCCH-type with G patch domain-containing protein	View
4II1	B	139	Zinc finger CCCH-type with G patch domain-containing protein	View
4II1	C	130	Zinc finger CCCH-type with G patch domain-containing protein	View
4JDN	A	142	Virulence plasmid protein pGP3-D	View
4JDN	B	141	Virulence plasmid protein pGP3-D	View
4JDN	C	145	Virulence plasmid protein pGP3-D	View
4JOX	A	118	13.6 kDa insecticidal crystal protein	View
4K15	B	129	Lmo2686 protein	View
4K15	C	129	Lmo2686 protein	View
4K55	A	118	Butyrophilin subfamily 3 member A1	View
4KG8	C	115	Tumor necrosis factor ligand superfamily member 14	View
4KGQ	A	139	Tumor necrosis factor ligand superfamily member 14	View
4KGQ	B	139	Tumor necrosis factor ligand superfamily member 14	View
4KNG	M	98	R-spondin-1	View
4KNG	P	94	R-spondin-1	View
4KT1	E	90	R-spondin-1	View
4MYP	A	121	Lmo2185 protein	View
4MYP	B	117	Lmo2185 protein	View
4MZ2	A	111	Sodium channel subunit beta-4	View
4NC2	A	121	Toxin B	View
4NI6	A	138	Putative surface anchored protein	View
4OFI	G	106	Kin of irre, isoform G	View
4OIG	B	170	Genome polyprotein	View
4OIT	A	106	Mannose-binding lectin	View
4OIT	B	107	Mannose-binding lectin	View
4OIT	C	106	Mannose-binding lectin	View
4OIT	D	106	Mannose-binding lectin	View
4PHX	H	123	Protein AggB	View
4QEY	A	123	Uncharacterized protein	View
4QEY	B	122	Uncharacterized protein	View
4QEY	C	122	Uncharacterized protein	View
4QEY	D	121	Uncharacterized protein	View
4QEY	E	122	Uncharacterized protein	View
4QEY	F	122	Uncharacterized protein	View
4QEY	G	123	Uncharacterized protein	View
4QEY	H	123	Uncharacterized protein	View
4QEY	I	123	Uncharacterized protein	View
4QEY	J	122	Uncharacterized protein	View
4QQD	A	134	E3 ubiquitin-protein ligase UHRF1	View
4QQD	B	136	E3 ubiquitin-protein ligase UHRF1	View
4QXW	A	107	Carcinoembryonic antigen-related cell adhesion molecule 1	View
4QXW	B	107	Carcinoembryonic antigen-related cell adhesion molecule 1	View
4S3H	A	88	Uncharacterized protein mdb1	View
4S3H	C	90	Uncharacterized protein mdb1	View
4S3H	D	90	Uncharacterized protein mdb1	View
4UFR	D	102	R-spondin-2	View
4UMG	A	102	Protein lin-41	View
4UU4	A	143	Lipopolysaccharide export system protein LptA	View
4XIN	A	114	LpqH orthologue	View
4XIN	B	114	LpqH orthologue	View
4XL1	A	115	Neurogenic locus notch homolog protein 1	View
4XL1	D	117	Neurogenic locus notch homolog protein 1	View
4XL8	A	171	Fiber-1	View
4XL8	B	161	Fiber-1	View
4XL8	C	167	Fiber-1	View
4XUR	A	161	Endo-1,4-beta-xylanase C	View
4XUR	B	161	Endo-1,4-beta-xylanase C	View
4XUR	C	161	Endo-1,4-beta-xylanase C	View
4Y88	A	108	Carcinoembryonic antigen-related cell adhesion molecule 8	View
4Y89	A	109	Carcinoembryonic antigen-related cell adhesion molecule 7	View
4Y89	B	109	Carcinoembryonic antigen-related cell adhesion molecule 7	View
4Y89	C	108	Carcinoembryonic antigen-related cell adhesion molecule 7	View
4Y89	D	108	Carcinoembryonic antigen-related cell adhesion molecule 7	View
4Y8A	A	108	Carcinoembryonic antigen-related cell adhesion molecule 6	View
4Y8A	B	108	Carcinoembryonic antigen-related cell adhesion molecule 6	View
4YMY	A	153	UPF0678 fatty acid-binding protein-like protein At1g79260	View
4YTL	A	97	Transcription elongation factor SPT5	View
4YTL	B	97	Transcription elongation factor SPT5	View
4ZJM	A	107	Lipoprotein LpqH	View
4ZJM	C	110	Lipoprotein LpqH	View
4ZJM	F	111	Lipoprotein LpqH	View
5BOK	A	102	Ferredoxin	View
5CIR	E	102	Tumor necrosis factor receptor superfamily member 10A	View
5CIR	F	98	Tumor necrosis factor receptor superfamily member 10A	View
5D55	A	143	HdaA (Adhesin), HUS-associated diffuse adherence	View
5DMJ	B	113		View
5DMJ	E	112		View
5DMJ	G	112		View
5E50	A	111	Aprataxin and PNK-like factor	View
5E50	B	110	Aprataxin and PNK-like factor	View
5FFL	A	113	CMRF35-like molecule 1	View
5FPZ	A	110	Pectin degradation protein	View
5FQ0	A	110	KDGF	View
5FQ0	B	109	KDGF	View
5FQ0	C	109	KDGF	View
5FQ0	D	108	KDGF	View
5FQ8	E	145	Uncharacterized protein	View
5FQ8	F	146	Uncharacterized protein	View
5GGS	Y	114	Programmed cell death protein 1	View
5GGS	Z	113	Programmed cell death protein 1	View
5HBA	B	127	Uncharacterized protein	View
5HBA	C	126	Uncharacterized protein	View
5HJ0	A	100	Kinetochore protein mis18	View
5HJ0	B	100	Kinetochore protein mis18	View
5HJ0	C	100	Kinetochore protein mis18	View
5IJC	C	136	Lymphocyte antigen 96	View
5IJC	D	136	Lymphocyte antigen 96	View
5IUS	A	117	Programmed cell death protein 1	View
5IUS	B	115	Programmed cell death protein 1	View
5K79	A	108	Cyanovirin-N domain protein	View
5K79	B	108	Cyanovirin-N domain protein	View
5L8L	B	109	New antigen receptor variable domain	View
5MKD	D	122	Uncharacterized protein YweA	View
5SV5	A	103	Putative microbial collagenase	View
5TX4	A	107	TGF-beta receptor type-2	View
5UFV	B	227	Glycoside hydrolase family 61 protein	View
5UFV	D	227	Glycoside hydrolase family 61 protein	View
5UFV	E	227	Glycoside hydrolase family 61 protein	View
5UFV	F	227	Glycoside hydrolase family 61 protein	View
1A14	L	104	Ig kappa chain V-V region HP 93G7	View
1A2Y	A	107	Ig kappa chain V-V region K2	View
1BVK	A	108		View
1C1L	A	135	Congerin-1	View
1CZT	A	160	Coagulation factor V	View
1DLF	H	114		View
1EJ8	A	140	Superoxide dismutase 1 copper chaperone	View
1F6L	L	106	Ig kappa chain V-I region DEE	View
1FQT	A	109	Biphenyl dioxygenase system ferredoxin subunit	View
1G8K	B	133	Arsenite oxidase subunit AioB	View
1GP0	A	133	Cation-independent mannose-6-phosphate receptor	View
1GR3	A	132	Collagen alpha-1(X) chain	View
1IVL	A	107		View
1J05	B	113	Anti-myosin immunoglobulin heavy chain variable region	View
1J48	A	106	Antitumor antibiotic C-1027 apoprotein	View
1KAC	A	185	Fiber protein	View
1KMT	A	138	Rho GDP-dissociation inhibitor 1	View
1KTJ	A	129	Mite group 2 allergen Der p 2	View
1KXV	C	119		View
1M9Z	A	105	TGF-beta receptor type-2	View
1MQK	L	109	Ig kappa chain V-V region MOPC 149	View
1NOA	A	113	Neocarzinostatin	View
1NQJ	A	98	Class1 collagenase	View
1O4T	A	115	Oxalate-binding protein	View
1O91	A	131	Collagen alpha-1(VIII) chain	View
1OHQ	A	120	Ig heavy chain V-III region 23	View
1P5V	B	136	F1 capsule antigen	View
1PKO	A	123	Myelin-oligodendrocyte glycoprotein	View
1QHV	A	195	Fiber protein	View
1R0U	A	142	Uncharacterized beta-barrel protein YwiB	View
1RG8	A	141	Fibroblast growth factor 1	View
1SFP	A	111	Spermadhesin-1	View
1SLU	A	131	Ecotin	View
1SPP	A	109	Major seminal plasma glycoprotein PSP-I	View
1SPP	B	112	Major seminal plasma glycoprotein PSP-II	View
1SRD	A	154	Superoxide dismutase [Cu-Zn], chloroplastic	View
1T2J	A	112	Single chain Fv	View
1U5X	A	130	Tumor necrosis factor ligand superfamily member 13	View
1V1H	A	103	Fibritin	View
1VER	A	100	New antigen receptor variable domain	View
1VES	A	113	New antigen receptor variable domain	View
1XAU	A	104	B- and T-lymphocyte attenuator	View
1ZE3	H	122	Protein FimH	View
1ZTX	E	101	Envelope protein	View
2A50	B	167	GFP-like non-fluorescent chromoprotein FP595	View
2AW2	A	110	B- and T-lymphocyte attenuator	View
2BCM	A	138	F1845 fimbrial protein	View
2CBT	A	111	Neocarzinostatin	View
2CD0	A	107	Ig lambda chain V-VI region AR	View
2CG7	A	90	Fibronectin	View
2CKK	A	120	DNA/RNA-binding protein KIN17	View
2CUA	A	122	Cytochrome c oxidase subunit 2	View
2DE6	D	104	Ferredoxin CarAc	View
2E4Q	A	108	Biphenyl dioxygenase ferredoxin subunit	View
2E56	A	144	Lymphocyte antigen 96	View
2FJ8	A	120	Bowman-Birk type trypsin inhibitor	View
2HP4	A	114	T-cell surface glycoprotein CD8 alpha chain	View
2HRV	A	139	Genome polyprotein	View
2HUH	A	144	Putative DNA mismatch repair protein	View
2I7F	A	102	Ferredoxin component of dioxygenase	View
2MCM	A	112	Macromomycin	View
2NMS	A	112	CMRF35-like molecule 1	View
2O6F	A	157	34 kDa membrane antigen	View
2OOJ	A	125	Uncharacterized protein	View
2OVS	A	115	Type three secretion system protein GrlR	View
2P39	A	142	Fibroblast growth factor 23	View
2PFW	A	109	Cupin 2, conserved barrel domain protein	View
2Q20	A	108	Ig kappa chain V-I region AU	View
2Q8O	A	125	Tumor necrosis factor ligand superfamily member 18	View
2QFE	A	139	Calpain-7	View
2QSQ	A	111	Carcinoembryonic antigen-related cell adhesion molecule 5	View
2QZ5	A	152	Axin interactor, dorsalization-associated protein	View
2QZQ	A	149	Axin interactor, dorsalization-associated protein	View
2R39	A	107	FixG-related protein	View
2UZI	H	114		View
2VH5	L	104		View
2WNV	B	132	Complement C1q subcomponent subunit B	View
2WNV	C	129	Complement C1q subcomponent subunit C	View
3B5G	A	111		View
3LN9	A	124		View
3QYC	A	125		View
3TPK	A	120		View
4HGM	A	103		View
4JVP	A	131		View
4LGP	B	116		View
4RAV	A	118		View
4X7F	C	114		View
4YGA	B	124		View
4Z9K	B	116		View
5E03	A	113		View
5IVN	A	123		View
5LBS	L	110		View

Topology view of query protein [ProLego results]

3QZM : B

Topology Information