ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain3NPI : A
MoleculePutative TetR-family regulatory protein
Residues203
Sequence
SSE Sequence*(11) HHHHHHHHHHH
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ha.0.Hp.0.Hr.0.Hr.Hr.0.0-Hr.Hr.0.Hr.Ha.Hr.0.0.0-Hr.0.0.0.Hp.0.0.Ha-0.0.0.0.0.0.0-Hr.0.0.0.0.0-0.0.0.0.Ha-0.0.0.0-0.0.0-0.0-0

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3NPI_A
shapeImage
Protein Id: 3NPI_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3NPI_A
shapeImage
Protein Id: 3NPI_A

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 HHH Ha.0-Hr False 2XTC:A, 2XTC:B, 2XZ2:A, 3M8A:B, 3M8A:C, 3M8A:E, 3M8A:H, 3M8A:J, 3M8A:L, 4IHF:J, 4NKJ:A,
3 HHH 0.Hp-Hr False d1jeqa1, d1y02a1, 1jeqA05,
3 HHH Hp.0-0 False 3HLS:E, 3HLS:F, 3HLS:H, 3MP7:B, 3MQ7:B, 3MQ7:C, 3MQ7:D, 3MQ7:E, 5ED9:B, 2BL0:A, d3ag3i_, 1v54I00,
3 HHH 0.Hr-Hr True 3E7L:B, 4CGE:A, 4GHJ:A, 4OW1:B, 4OW1:E, 4OW1:W, 4OW1:X, 5LUP:A, 5LUP:B, 5LUP:C, 5LUP:D, 5LUP:E, 5LUP:F, 5LUP:G, 5LUP:H, 5LUP:I, 5LUP:J, 5LUP:K, 5LUP:L, 5LUS:A, 5LUS:B, 5LUS:C, 5LUS:D, 5LUS:E, 5LUS:F, 5LUS:G, 5LUS:H, 5LUS:I, 5LUS:J, 1A0A:A, 1HYP:A, 2OYY:A, 2VKL:A, 5HUB:A, d1a0aa_, d1hypa_, d3cjrb1, 1a0aA00, 1hypA00,
3 HHH Hr.0-Ha True 3TEQ:A, 4DH2:D, 4G2K:A, 4G2K:B, 4G2K:C, 4JF3:A, 4JF3:B, 4JGS:A, 4JGS:B, 4JGS:C, 4JGS:D, 4JGS:E, 4JGS:F, 4JGS:G, 4JGS:H, 4JGS:I, 4N21:A, 4N21:B, 4N21:C, 4N21:D, 4N21:F, 2EBO:A, 5HA6:A, 2eboA00,
3 HHH Hr.Hr-0 True 2XUV:A, 2XUV:B, 2XUV:C, 2XUV:D, 2YFV:A, 2YFV:B, 3B0D:C, 3B0D:W, 3CX5:H, 3F75:P, 3MVD:B, 3MVD:F, 3NQJ:A, 3NQJ:B, 3R45:A, 3R45:B, 3V9R:D, 3X1T:B, 3X1T:F, 4CSR:B, 4E45:B, 4E45:D, 4E45:L, 4E45:N, 4H9N:B, 4YNH:A, 4YNH:B, 5AY8:B, 5AY8:F, 5BNX:A, 5BNX:B, 5DA5:Y, 5FIR:L, 5G49:B, 5JA4:A, 5JA4:B, 1A7W:A, 1B67:A, 1JFI:A, 1JKO:C, 1KU5:A, 1TAF:A, 1TAF:B, 2D3E:A, 2HUE:B, 2HUE:C, 2NXQ:A, 2YFW:B, 4ONS:B, d1b67a_, d1jfia_, d1n1jb_, d1tafa_, d1tafb_, d1zx3a1, d2huec_, d2np3a1, d2nxqa_, d3cx5h_, 1b67A00, 1b67A00, 1jfiA00, 1kx5B00, 1n1jB00, 1tafA00, 1tafB00, 1zx3A01, 2hueC00, 3cx5H00,
3 HHH Hr.0-0 True 2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A, d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
4 HHHH Hp.0.Hr-0.Hr-0 False 5LUT:D, d3k2aa_,
4 HHHH 0.Hr.Hr-Hr.0-0 False 4WV4:A,
4 HHHH Hr.Hr.0-0.0-0 False 2A6H:E, 2a6hE00,
4 HHHH Hr.0.0-0.0-Ha False
Protein In ProLegoDB with identical/similar Topology