Protein Detail

Protein Information

PDBId & Chain	3LYW : A
Molecule	YbbR family protein
Residues	84
Sequence
SSE Sequence^*(7)	`EEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea.0.Ea.0-Ep.0.Ea.0.0-0.0.0.Ea-0.Ea.Ep-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3LYW_A

Protein Id: 3LYW_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3LYW_A

Protein Id: 3LYW_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-Ep	False		d2jdih2,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	EEEE	Ea.0.Ea-Ep.0-0	False		d1exta1, d2heyr3,
4	EEEE	0.Ea.0-0.Ea-0	False	3EB5:A, 4AUQ:B, 4AUQ:E,
4	EEEE	Ea.0.Ea-Ea.0-0	False		d1h8pa1, d1pjua2,
4	EEEE	0.Ea.0-0.0-Ea	False		d1jhna3, d1nlta3, 1y8eB04,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X89	E	91	Beta-2-microglobulin	View
2X89	F	91	Beta-2-microglobulin	View
2X89	G	86	Beta-2-microglobulin	View
2XCM	C	92	Protein SGT1 homolog A	View
2XCM	D	92	Protein SGT1 homolog A	View
2XET	A	89	F1 capsule-anchoring protein	View
2XET	B	88	F1 capsule-anchoring protein	View
2XQX	A	143	Putative endo-beta-N-acetylglucosaminidase	View
2XQX	B	142	Putative endo-beta-N-acetylglucosaminidase	View
2Y4Y	A	82	Type 4 fimbrial biogenesis protein PilP	View
2Y4Y	B	76	Type 4 fimbrial biogenesis protein PilP	View
2Y4Y	C	79	Type 4 fimbrial biogenesis protein PilP	View
2Y4Y	D	80	Type 4 fimbrial biogenesis protein PilP	View
2ZJR	T	84	50S ribosomal protein L27	View
3AQX	B	100	Beta-1,3-glucan-binding protein	View
3AQY	B	99	Beta-1,3-glucan-binding protein	View
3BB6	A	105	Uncharacterized protein YeaR	View
3BB6	B	107	Uncharacterized protein YeaR	View
3BB6	C	109	Uncharacterized protein YeaR	View
3BB6	D	100	Uncharacterized protein YeaR	View
3C5X	C	81	Polyprotein	View
3CBJ	B	109	Chagasin	View
3CW3	A	93	Absent in melanoma 1 protein	View
3D1M	D	99	Cell adhesion molecule-related/down-regulated by oncogenes	View
3DA0	A	132	BPP	View
3DA0	B	135	BPP	View
3DA0	C	133	BPP	View
3DL3	E	108	Tellurite resistance protein B	View
3DL3	G	93	Tellurite resistance protein B	View
3DL3	H	94	Tellurite resistance protein B	View
3DSO	A	66	Copper resistance protein K	View
3E8V	A	82	Possible transglutaminase-family protein	View
3GGM	A	75	Uncharacterized protein	View
3GGM	B	74	Uncharacterized protein	View
3GGM	D	75	Uncharacterized protein	View
3GLA	A	97	Low molecular weight heat shock protein	View
3GLA	B	99	Low molecular weight heat shock protein	View
3HD4	A	131	Nucleoprotein	View
3HZ2	A	84	Beta/gama crystallin family protein	View
3HZ2	B	84	Beta/gama crystallin family protein	View
3HZ2	C	84	Beta/gama crystallin family protein	View
3HZ2	D	84	Beta/gama crystallin family protein	View
3IE4	A	101	Gram-negative bacteria-binding protein 3	View
3IE4	B	101	Gram-negative bacteria-binding protein 3	View
3K6D	A	99	LOC495024 protein	View
3K6F	B	100	Cadherin-13	View
3KVQ	A	82	Vascular endothelial growth factor receptor 2	View
3L1E	A	105	Alpha-crystallin A chain	View
3L48	A	81	Outer membrane usher protein PapC	View
3L48	B	80	Outer membrane usher protein PapC	View
3L48	C	86	Outer membrane usher protein PapC	View
3L48	D	80	Outer membrane usher protein PapC	View
3L48	E	79	Outer membrane usher protein PapC	View
3LWC	A	99	Uncharacterized protein	View
3NRL	A	67	Uncharacterized protein	View
3NRL	B	67	Uncharacterized protein	View
3O0L	A	107	Uncharacterized protein	View
3OE3	E	78	Putative periplasmic protein	View
3PE9	C	90	Glucanase	View
3PE9	D	85	Glucanase	View
3Q69	A	103	Putative mucus binding protein	View
3QOR	A	119	Nuclear migration protein nudC	View
3QOR	B	118	Nuclear migration protein nudC	View
3QOR	C	117	Nuclear migration protein nudC	View
3QOR	D	116	Nuclear migration protein nudC	View
3RDV	A	70	CAP-Gly domain-containing linker protein 1	View
3RDV	B	71	CAP-Gly domain-containing linker protein 1	View
3RDV	C	71	CAP-Gly domain-containing linker protein 1	View
3RDV	D	72	CAP-Gly domain-containing linker protein 1	View
3W1Z	A	134	Heat shock protein 16	View
3W1Z	D	110	Heat shock protein 16	View
3WIH	A	88	Roundabout homolog 1	View
3WIH	B	88	Roundabout homolog 1	View
3ZZL	A	70	Transcription attenuation protein MtrB	View
3ZZL	B	70	Transcription attenuation protein MtrB	View
3ZZL	C	70	Transcription attenuation protein MtrB	View
3ZZQ	A	65	Transcription attenuation protein MtrB	View
3ZZQ	B	65	Transcription attenuation protein MtrB	View
3ZZQ	D	65	Transcription attenuation protein MtrB	View
3ZZQ	E	65	Transcription attenuation protein MtrB	View
3ZZS	A	65	Transcription attenuation protein MtrB	View
3ZZS	B	65	Transcription attenuation protein MtrB	View
3ZZS	C	65	Transcription attenuation protein MtrB	View
3ZZS	D	65	Transcription attenuation protein MtrB	View
3ZZS	E	65	Transcription attenuation protein MtrB	View
3ZZS	F	65	Transcription attenuation protein MtrB	View
3ZZS	G	65	Transcription attenuation protein MtrB	View
3ZZS	H	65	Transcription attenuation protein MtrB	View
3ZZS	I	65	Transcription attenuation protein MtrB	View
4AQO	A	86	Collagenase	View
4B6M	A	80	Tubulin-specific chaperone, putative	View
4B6M	B	79	Tubulin-specific chaperone, putative	View
4BJJ	B	85	Transcription factor tau subunit sfc7	View
4CGU	B	80	Protein interacting with Hsp90 1	View
4D7P	A	96	Desulfoferrodoxin	View
4EL6	A	97	Putative interleukin-4-inducing protein	View
4G5A	A	98	Uncharacterized protein	View
4G5A	B	98	Uncharacterized protein	View
4GIO	A	96	Putative lipoprotein	View
4GIO	B	96	Putative lipoprotein	View
4IL7	A	85	Uncharacterized protein	View
4JEG	B	93	Fibronectin	View
4JG9	A	135	Uncharacterized protein	View
4JG9	B	135	Uncharacterized protein	View
4JW0	A	95	Carbon dioxide concentrating mechanism protein	View
4JW0	B	97	Carbon dioxide concentrating mechanism protein	View
4JW0	C	95	Carbon dioxide concentrating mechanism protein	View
4JW0	D	95	Carbon dioxide concentrating mechanism protein	View
4JW0	E	97	Carbon dioxide concentrating mechanism protein	View
4L9D	A	82	Protease	View
4L9D	B	81	Protease	View
4LPL	A	142	Glycosyl hydrolase, family 31/fibronectin type III domain protein	View
4LSD	A	96	Fibronectin type III domain-containing protein 5	View
4LSD	C	93	Fibronectin type III domain-containing protein 5	View
4M5S	A	87	Alpha-crystallin B chain	View
4N8F	A	95	Carbon dioxide concentrating mechanism protein	View
4N8F	B	95	Carbon dioxide concentrating mechanism protein	View
4N8F	C	97	Carbon dioxide concentrating mechanism protein	View
4N8F	D	95	Carbon dioxide concentrating mechanism protein	View
4N8F	E	95	Carbon dioxide concentrating mechanism protein	View
4N8P	A	119	Uncharacterized protein	View
4N8X	1	99	Carbon dioxide concentrating mechanism protein	View
4N8X	2	96	Carbon dioxide concentrating mechanism protein	View
4N8X	4	98	Carbon dioxide concentrating mechanism protein	View
4N8X	A	98	Carbon dioxide concentrating mechanism protein	View
4N8X	B	99	Carbon dioxide concentrating mechanism protein	View
4N8X	D	98	Carbon dioxide concentrating mechanism protein	View
4N8X	E	97	Carbon dioxide concentrating mechanism protein	View
4N8X	F	98	Carbon dioxide concentrating mechanism protein	View
4N8X	G	97	Carbon dioxide concentrating mechanism protein	View
4N8X	H	98	Carbon dioxide concentrating mechanism protein	View
4N8X	I	98	Carbon dioxide concentrating mechanism protein	View
4N8X	J	96	Carbon dioxide concentrating mechanism protein	View
4N8X	L	98	Carbon dioxide concentrating mechanism protein	View
4N8X	M	98	Carbon dioxide concentrating mechanism protein	View
4N8X	N	98	Carbon dioxide concentrating mechanism protein	View
4N8X	O	96	Carbon dioxide concentrating mechanism protein	View
4N8X	P	99	Carbon dioxide concentrating mechanism protein	View
4N8X	Q	97	Carbon dioxide concentrating mechanism protein	View
4N8X	R	98	Carbon dioxide concentrating mechanism protein	View
4N8X	S	98	Carbon dioxide concentrating mechanism protein	View
4N8X	T	94	Carbon dioxide concentrating mechanism protein	View
4N8X	U	97	Carbon dioxide concentrating mechanism protein	View
4N8X	V	98	Carbon dioxide concentrating mechanism protein	View
4N8X	W	97	Carbon dioxide concentrating mechanism protein	View
4N8X	X	98	Carbon dioxide concentrating mechanism protein	View
4N8X	Y	97	Carbon dioxide concentrating mechanism protein	View
4N8X	Z	98	Carbon dioxide concentrating mechanism protein	View
4O00	A	102	Titin	View
4O00	B	104	Titin	View
4OLE	C	115	Next to BRCA1 gene 1 protein	View
4OV6	F	98	Adnectin	View
4OV6	G	95	Adnectin	View
4R03	A	107	Uncharacterized protein	View
4R8O	A	92	Uncharacterized protein	View
4R8O	B	92	Uncharacterized protein	View
4U6T	A	86	Collagenase	View
4U6T	B	86	Collagenase	View
4U6T	C	86	Collagenase	View
4U6T	D	86	Collagenase	View
4UAP	A	150	Glycosyl hydrolase, family 31/fibronectin type III domain protein	View
4UAP	B	149	Glycosyl hydrolase, family 31/fibronectin type III domain protein	View
4WTX	A	97	Integrin beta-4	View
4WVR	A	98	Down syndrome cell adhesion molecule 1, isoform G	View
4WVR	B	99	Down syndrome cell adhesion molecule 1, isoform G	View
4WVR	C	99	Down syndrome cell adhesion molecule 1, isoform G	View
4WVR	D	98	Down syndrome cell adhesion molecule 1, isoform G	View
4X5L	A	96	Down syndrome cell adhesion molecule 1, isoform AM	View
4X5L	B	96	Down syndrome cell adhesion molecule 1, isoform AM	View
4X5L	D	96	Down syndrome cell adhesion molecule 1, isoform AM	View
4XED	A	96	Peptidase M14, carboxypeptidase A	View
4YE0	A	100	Stress-induced protein 1	View
4YE0	B	100	Stress-induced protein 1	View
4ZJ9	A	93	Putative molecular chaperone (Small heat shock protein)	View
4ZZ5	A	132	Glucanase	View
4ZZ5	B	131	Glucanase	View
5DC0	A	91	Fibronectin	View
5DFT	A	89	Fibronectin	View
5DFT	B	88	Fibronectin	View
5DFT	C	89	Fibronectin	View
5DFT	D	89	Fibronectin	View
5DFT	E	89	Fibronectin	View
5DFT	F	88	Fibronectin	View
5DFT	G	88	Fibronectin	View
5DFT	H	88	Fibronectin	View
5DFT	I	88	Fibronectin	View
5DFT	J	89	Fibronectin	View
5DM6	T	84	50S ribosomal protein L27	View
5DS1	A	92	17.1 kDa class II heat shock protein	View
5DS1	B	90	17.1 kDa class II heat shock protein	View
5DS1	C	90	17.1 kDa class II heat shock protein	View
5DS2	A	94	18.1 kDa class I heat shock protein	View
5DS2	B	94	18.1 kDa class I heat shock protein	View
5DS2	C	94	18.1 kDa class I heat shock protein	View
5DS2	D	94	18.1 kDa class I heat shock protein	View
5DS2	E	94	18.1 kDa class I heat shock protein	View
5DS2	F	94	18.1 kDa class I heat shock protein	View
5DZ8	B	154	Uncharacterized protein	View
5EZU	A	76	Protein A46	View
5GZT	A	69	Chitinase	View
5IRO	C	96	Beta-2-microglobulin	View
5IRO	G	98	Beta-2-microglobulin	View
5IRO	K	98	Beta-2-microglobulin	View
5IRO	O	98	Beta-2-microglobulin	View
5IRO	S	98	Beta-2-microglobulin	View
5IRO	W	98	Beta-2-microglobulin	View
5IXB	A	105	Melanoma-derived growth regulatory protein	View
5IXB	B	105	Melanoma-derived growth regulatory protein	View
5J7C	C	97	Fibronectin	View
5J7C	D	98	Fibronectin	View
5J7N	A	109	Low molecular weight heat shock protein	View
5KVM	C	95		View
5N76	A	62	CooT	View
5N76	B	63	CooT	View
5N76	C	63	CooT	View
5N76	D	62	CooT	View
5N76	E	62	CooT	View
5N76	F	59	CooT	View
5NKQ	E	87		View
5NKQ	F	86		View
5NKQ	G	88		View
1HE7	A	108	High affinity nerve growth factor receptor	View
1K12	A	158	Fucolectin	View
1NCI	A	102	Cadherin-2	View
1O7I	A	115	Single-stranded DNA binding protein Ssb	View
1PJU	A	115	Wound-induced proteinase inhibitor 2	View
1SJV	A	102		View
1V8H	A	106	Sulfur oxidation protein SoxZ	View
1WWB	X	103	BDNF/NT-3 growth factors receptor	View
1WWC	A	105	NT-3 growth factor receptor	View
1XAK	A	68	Protein 7a	View
1YA5	T	89	Telethonin	View
1ZVN	A	99	Cadherin-20	View
1ZXK	A	96	Cadherin-8	View
2A4C	A	99	Cadherin-11	View
2BV2	A	83		View
2CCV	A	99	Agglutinin	View
2HQH	A	72	Dynactin subunit 1	View
2J22	A	137	Fucolectin-related protein	View
2O30	A	81	NUCLEAR MOVEMENT PROTEIN	View
2OPC	A	115	AvrL567-A	View
2OPK	A	107	Uncharacterized protein	View
2PSM	C	69	Interleukin-15 receptor subunit alpha	View
2R2C	A	119	Outer membrane protein Omp28	View
2W07	B	121	Minor pilin subunit PapF	View
3QWQ	B	95		View
3T04	D	103		View
5MTM	B	92		View
5MTN	B	94		View

Topology view of query protein [ProLego results]

3LYW : A

Topology Information