Protein Detail

Protein Information

PDBId & Chain	3JS9 : C
Molecule	Nucleoside diphosphate kinase family protein
Residues	148
Sequence
SSE Sequence^*(11)	`EHHEHHEHHEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Cp.0.0.0.Hr.0.Ca.Hp.Ca.Ca-Ca.0.0.0.0.0.0.Ca.0-0.0.0.Ea.0.0.0.0-Ca.Hp.Cp.0.0.0.Ca-0.Ca.Hr.0.0.0-Ea.0.Hr.0.Ha-Cp.0.0.Cp-0.0.0-Ea.0-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3JS9_C

Protein Id: 3JS9_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3JS9_C

Protein Id: 3JS9_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
3	HHE	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
4	HEHH	0.0.Hr-0.0-0	True	4OM3:B, 4UZZ:A, 5TW1:T, 2OA5:A,	d2oa5a_, 1j1eF00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3JS9	B	148	Nucleoside diphosphate kinase family protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3EVO	A	133	Nucleoside diphosphate kinase	View
3EVO	B	133	Nucleoside diphosphate kinase	View
3JS9	A	148	Nucleoside diphosphate kinase family protein	View
3PJ9	A	137	Nucleoside diphosphate kinase	View
3PJ9	B	137	Nucleoside diphosphate kinase	View
3PJ9	C	136	Nucleoside diphosphate kinase	View
3PJ9	D	139	Nucleoside diphosphate kinase	View
3VGU	A	140	Nucleoside diphosphate kinase	View
3VGU	B	140	Nucleoside diphosphate kinase	View
3VGU	C	140	Nucleoside diphosphate kinase	View
3VGU	D	140	Nucleoside diphosphate kinase	View
3VGU	E	140	Nucleoside diphosphate kinase	View
3VGU	F	140	Nucleoside diphosphate kinase	View
3VGU	G	140	Nucleoside diphosphate kinase	View
3VGU	H	138	Nucleoside diphosphate kinase	View
4ANE	A	135	Nucleoside diphosphate kinase	View
4ANE	B	132	Nucleoside diphosphate kinase	View
4ANE	C	135	Nucleoside diphosphate kinase	View
4ANE	D	131	Nucleoside diphosphate kinase	View
4ANE	E	135	Nucleoside diphosphate kinase	View
4C6A	A	151	Nucleoside diphosphate kinase, cytosolic	View
4HR2	A	142	Nucleoside diphosphate kinase	View
4HR2	B	140	Nucleoside diphosphate kinase	View
4UOH	B	151	Nucleoside diphosphate kinase	View
4W98	A	145	Nucleoside diphosphate kinase	View
5V6D	A	140	Nucleoside diphosphate kinase	View
5V6D	B	140	Nucleoside diphosphate kinase	View
5V6D	C	139	Nucleoside diphosphate kinase	View
5V6D	D	140	Nucleoside diphosphate kinase	View
5V6D	E	139	Nucleoside diphosphate kinase	View
5V6D	F	141	Nucleoside diphosphate kinase	View
5V6D	G	141	Nucleoside diphosphate kinase	View
5V6D	H	141	Nucleoside diphosphate kinase	View
5V6D	I	140	Nucleoside diphosphate kinase	View
5V6D	J	141	Nucleoside diphosphate kinase	View
5V6D	K	140	Nucleoside diphosphate kinase	View
5V6D	L	141	Nucleoside diphosphate kinase	View
5V6D	M	141	Nucleoside diphosphate kinase	View
5V6D	N	141	Nucleoside diphosphate kinase	View
5V6D	O	139	Nucleoside diphosphate kinase	View
5V6D	P	141	Nucleoside diphosphate kinase	View
1EHW	A	143	Nucleoside diphosphate kinase, mitochondrial	View
1NB2	A	149	Nucleoside diphosphate kinase	View
1NHK	L	143	Nucleoside diphosphate kinase	View
1U8W	A	149	Nucleoside diphosphate kinase 1	View
1WKJ	A	137	Nucleoside diphosphate kinase	View
1Y82	A	139	VapC ribonuclease PF0355	View
2FE1	A	130	Ribonuclease VapC3	View
2VU5	A	148	Nucleoside diphosphate kinase	View

Topology view of query protein [ProLego results]

3JS9 : C

Topology Information