ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1fshA00 1.10.10.10 94 see topology Segment polarity protein dishevelled homolog DVL-1 Mus musculus
CATH 3.5 1fzpD00 1.10.10.10 100 see topology Transcriptional regulator SarA Staphylococcus aureus
CATH 3.5 1gvjA00 1.10.10.10 142 see topology Protein C-ets-1 Homo sapiens
CATH 3.5 1gxqA00 1.10.10.10 105 see topology Phosphate regulon transcriptional regulatory protein PhoB Escherichia coli
CATH 3.5 1hkqA00 1.10.10.10 125 see topology Replication protein Pseudomonas savastanoi
CATH 3.5 1hksA00 1.10.10.10 106 see topology Heat shock factor protein Drosophila melanogaster
CATH 3.5 1hstA00 1.10.10.10 74 see topology Histone H5 Gallus gallus
CATH 3.5 1i27A00 1.10.10.10 73 see topology General transcription factor IIF subunit 1 Homo sapiens
CATH 3.5 1j5yA01 1.10.10.10 64 see topology Probable transcription repressor NiaR Thermotoga maritima
CATH 3.5 1j9iA00 1.10.10.10 68 see topology Terminase small subunit Escherichia virus Lambda
CATH 3.5 1je8E00 1.10.10.10 64 see topology Nitrate/nitrite response regulator protein NarL Escherichia coli
CATH 3.5 1jgsA00 1.10.10.10 138 see topology Multiple antibiotic resistance protein MarR Escherichia coli
CATH 3.5 1k78B00 1.10.10.10 102 see topology Protein C-ets-1 Mus musculus
CATH 3.5 1k78I00 1.10.10.10 58 see topology Paired box protein Pax-5 Homo sapiens
CATH 3.5 1ka8A00 1.10.10.10 100 see topology Putative P4-specific DNA primase Enterobacteria phage P4
CATH 3.5 1kq8A00 1.10.10.10 75 see topology Forkhead box protein Q1 Rattus norvegicus
CATH 3.5 1ku3A00 1.10.10.10 61 see topology RNA polymerase sigma factor SigA Thermus aquaticus
CATH 3.5 1l0oC00 1.10.10.10 57 see topology RNA polymerase sigma factor Geobacillus stearothermophilus
CATH 3.5 1lddA00 1.10.10.10 74 see topology Anaphase-promoting complex subunit 2 Saccharomyces cerevisiae
CATH 3.5 1lj9B00 1.10.10.10 142 see topology Transcriptional regulator, MarR family Enterococcus faecalis
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins