Protein Detail

Protein Information

Domain Id	d2wfha_
DB_Source-Class	ASTRAL-1.75B, c.10.2.0
Molecule	u'Slit homolog 2 protein'
Residues	181
Sequence
SSE Sequence^*(10)	`EEEEEEEEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ep.Ep.Ep.Ep.Ep.0.0.0-0.0.0.0.0.0.Ca.Ep-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2wfha_

Protein Id: d2wfha_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2wfha_

Protein Id: d2wfha_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
6	EEEEEE	Ep.Ep.Ep.Ep.Ep-0.0.0.0-0.0.0-0.0-0	False		d1ezga_, 1ezgA00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2WFH	A	181	Slit homolog 2 protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CFU	A	141	Uncharacterized lipoprotein YjhA	View
3CQN	A	162	Violaxanthin de-epoxidase, chloroplastic	View
3CQN	B	161	Violaxanthin de-epoxidase, chloroplastic	View
3FBK	A	137	Regulator of G-protein signaling 3	View
3FBK	B	137	Regulator of G-protein signaling 3	View
3HSV	A	133	Speckle-type POZ protein	View
3HSV	B	132	Speckle-type POZ protein	View
3N08	A	151	UPF0098 protein CT_736	View
3N08	B	153	UPF0098 protein CT_736	View
4BEG	B	175	UPF0098 protein Rv2140c	View
4DY5	A	111	Gifsy-1 prophage protein	View
4DY5	B	107	Gifsy-1 prophage protein	View
4DY5	C	107	Gifsy-1 prophage protein	View
4G9S	B	111	Inhibitor of g-type lysozyme	View
4N7S	D	120	Uncharacterized protein	View
4NYQ	A	153	Milk protein	View
4WFV	A	153	Allergen Bos d 2	View
5B0H	B	133	Leukocyte cell-derived chemotaxin-2	View
5J9S	A	150	Protein ENL	View
1MSP	A	124	Major sperm protein isoform alpha	View
1ROW	A	107	Sperm-specific class P protein 19	View
1XKI	A	128	Lipocalin-1	View
2HLV	A	148	Odorant-binding protein	View
2I24	N	113	Novel antigen receptor	View
2I27	N	109	Antigen receptor	View
2RA6	A	141	Trichosurin	View
2WFH	A	181	Slit homolog 2 protein	View

Topology view of query protein [ProLego results]

d2wfha_

Topology Information