Protein Detail

Protein Information

Domain Id	d2rcqa_
DB_Source-Class	ASTRAL-1.75B, b.60.1.2
Molecule	u'Retinol-binding protein 2'
Residues	141
Sequence
SSE Sequence^*(12)	`EHHEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Cp.Ha.0.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea-0.0.0.0.0.Ep.Ep.Ep.0.0-Ea.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.Ep.0.0-0.0.0.Ea.0-0.0.0.Ep-0.Cp.0-Ep.Ca-Ea`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2rcqa_

Protein Id: d2rcqa_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2rcqa_

Protein Id: d2rcqa_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHE	Ha.0-0	False	3BPJ:A, 3BPJ:B, 3BPJ:C, 3BPJ:D, 3MTU:E, 3MTU:F, 4CLQ:B, 4HFX:A, 4IAO:C, 4IAO:D, 4OM3:A, 4X86:A, 4YTW:A, 4YTW:C, 5FD9:A, 1YKH:B, 2B9C:A,	d1ykhb1, d2bskb1,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
4	HHEE	Ha.0.Ea-0.0-0	False		d1nyra2,
4	HEEE	0.Ea.Ea-0.0-0	True	2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B,	d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
4	EEEE	Ea.Ea.Ea-0.Ep-0	True	3KVP:F, 4BV4:M, 4LXR:J, 4QQG:B, 4QQG:F, 2A28:A,	d1b9wa1, d1exta2, d1k4us_, d1kloa2, d1qypa_, d1wfwa_, d2heyr1, 1qypA00,
4	EEEE	Ea.Ea.Ea-Ep.Ep-0	False	3KVP:A, 3KVP:B, 3KVP:E, 1R8O:B,
5	HHEEE	Ha.0.Ea.Ea-0.0.0-0.0-0	False	1NVP:D, 1X0T:A,
6	HEEEEE	0.Ea.Ea.Ea.Ea-0.0.0.Ep-0.0.0-0.0-0	False		d1e44b_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4QYN	A	133	Retinol-binding protein 2	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3AKM	A	131	Fatty acid-binding protein, intestinal	View
3AKM	B	131	Fatty acid-binding protein, intestinal	View
3AKM	C	131	Fatty acid-binding protein, intestinal	View
3AKM	D	131	Fatty acid-binding protein, intestinal	View
3FEK	A	137	Cellular retinoic acid-binding protein 2	View
3FEK	B	137	Cellular retinoic acid-binding protein 2	View
3P6D	A	139	Fatty acid-binding protein, adipocyte	View
3PPT	A	133	Sodium-calcium exchanger	View
4AZQ	A	136	Fatty acid-binding protein, epidermal	View
4BVM	A	133	Myelin P2 protein	View
4I3B	A	139	Bilirubin-inducible fluorescent protein UnaG	View
4I3B	B	138	Bilirubin-inducible fluorescent protein UnaG	View
4I3B	C	138	Bilirubin-inducible fluorescent protein UnaG	View
4I3B	D	138	Bilirubin-inducible fluorescent protein UnaG	View
4I3B	E	139	Bilirubin-inducible fluorescent protein UnaG	View
4I3B	F	137	Bilirubin-inducible fluorescent protein UnaG	View
4QYN	A	133	Retinol-binding protein 2	View
4QYN	B	133	Retinol-binding protein 2	View
4TKB	A	133	Fatty acid-binding protein, heart	View
5BVQ	A	132	Fatty acid-binding protein FABP4	View
5BVQ	B	132	Fatty acid-binding protein FABP4	View
5BVT	A	134	Fatty acid-binding protein FABP5	View
5F7G	A	133	Retinol-binding protein 2	View
5FAZ	A	133	Retinol-binding protein 2	View
5FAZ	B	133	Retinol-binding protein 2	View
5FEN	A	133	Retinol-binding protein 2	View
5FEN	B	133	Retinol-binding protein 2	View
5FFH	A	133	Retinol-binding protein 2	View
5FFH	B	133	Retinol-binding protein 2	View
5HBS	A	139	Retinol-binding protein 1	View
5HZ5	A	134	Fatty acid-binding protein, epidermal	View
5HZ6	A	131	Fatty acid-binding protein, adipocyte	View
5HZ8	A	135	Fatty acid-binding protein, adipocyte	View
5HZ9	A	135	Fatty acid-binding protein, heart	View
5HZ9	B	135	Fatty acid-binding protein, heart	View
5HZ9	D	135	Fatty acid-binding protein, heart	View
5HZ9	E	135	Fatty acid-binding protein, heart	View
5HZ9	F	134	Fatty acid-binding protein, heart	View
1CBI	A	136	Cellular retinoic acid-binding protein 1	View
1FDQ	A	131	Fatty acid-binding protein, brain	View
1FTP	A	133	Fatty acid-binding protein, muscle	View
1G7N	A	131	Fatty acid-binding protein, adipocyte	View
1IFC	A	131	Fatty acid-binding protein, intestinal	View
1KQW	A	134	Uncharacterized protein	View
1LPJ	A	133	Retinoid-binding protein 7	View
1OPB	A	133	Retinol-binding protein 2	View
1VYF	A	135	14 kDa fatty acid-binding protein	View
1YIV	A	131	Myelin P2 protein	View
2G7B	A	137	Cellular retinoic acid-binding protein 2	View

Topology view of query protein [ProLego results]

d2rcqa_

Topology Information