Protein Detail

Protein Information

Domain Id	d2je6i1
DB_Source-Class	ASTRAL-1.75B, b.40.4.5
Molecule	u'Exosome complex component Rrp4'
Residues	87
Sequence
SSE Sequence^*(7)	`EEEHEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Cp.0.Ea.0-0.0.0.Cp.Ea-0.0.Ep.0-Ea.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2je6i1

Protein Id: d2je6i1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2je6i1

Protein Id: d2je6i1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Cp-0	False	5T59:C, 5T59:F, 5TDR:A, 2DS5:A,	d2ds5a_,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
4	EEEH	Ea.Ea.Cp-0.0-0	False	2H4O:A,	d2h4oa1,
4	EEHE	Ea.Cp.0-0.0-0	False	4CMZ:C,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3G74	C	83	Stage V sporulation protein AA	View
3G74	G	82	Stage V sporulation protein AA	View
3K7U	C	98	MP18 RNA editing complex protein	View
3K8R	A	83	Uncharacterized protein	View
3K8R	B	81	Uncharacterized protein	View
3OW2	2	92	50S ribosomal protein L44e	View
3STB	C	111	RNA-editing complex protein MP42	View
4AY9	A	88	Glycoprotein hormones alpha chain	View
4AY9	D	89	Glycoprotein hormones alpha chain	View
4AY9	G	88	Glycoprotein hormones alpha chain	View
4M1U	C	70	Verocytotoxin 2 subunit B	View
4OD9	A	97	Cathepsin D	View
4OD9	C	97	Cathepsin D	View
4UC4	A	109	Lysine-specific demethylase 4B	View
4UC4	B	109	Lysine-specific demethylase 4B	View
1BY2	A	112	Galectin-3-binding protein	View
1C4Q	A	69	Shiga-like toxin 1 subunit B	View
1VQO	3	92	50S ribosomal protein L44e	View
1X31	D	91	Subunit delta of sarcosine oxidase	View
2BOS	A	68	Verotoxin 2e subunit B	View
2H28	A	106	Cytoskeleton bundling-enhancing protein CbeA	View
2INW	A	115	Putative structural protein	View
2OYA	A	102	Macrophage receptor MARCO	View

Topology view of query protein [ProLego results]

d2je6i1

Topology Information