Protein Detail

Protein Information

Domain Id	d2dara2
DB_Source-Class	ASTRAL-1.75B, g.39.1.3
Molecule	u'PDZ and LIM domain protein 5'
Residues	45
Sequence
SSE Sequence^*(3)	`EEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2dara2

Protein Id: d2dara2

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2dara2

Protein Id: d2dara2

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3FIF	F	53	Uncharacterized lipoprotein YgdR	View
3MLQ	G	40	Transcription-repair-coupling factor	View
4A94	C	51	Metallocarboxypeptidase inhibitor	View
4EAG	B	58	5'-AMP-activated protein kinase subunit beta-1	View
4EAI	B	51	5'-AMP-activated protein kinase subunit beta-2	View
4OEL	B	69	Dipeptidyl peptidase 1	View
4PKF	C	37	TutF	View
5BWD	C	39	TutF	View
5DZD	A	37	E3 ubiquitin-protein ligase Itchy homolog	View
5K2M	E	52	Probable lysine biosynthesis protein	View
2BZY	A	63	Crk-like protein	View
2QN5	B	110	Bowman-Birk type bran trypsin inhibitor	View
2V8Q	B	73	5'-AMP-activated protein kinase subunit beta-2	View
d1co4a_	--	42	u'Metal-activated transcriptional activator protein AMT1'	View
d1dl6a_	--	58	u'Transcription initiation factor IIB'	View
d1egfa_	--	53	u'Pro-epidermal growth factor'	View
d1gl1i_	--	34	u'Protease inhibitors'	View
d1k36a_	--	46	u'Proepiregulin'	View
d1k81a_	--	36	u'Translation initiation factor 2 subunit beta'	View
d1ng2a1	--	58	u'Neutrophil cytosol factor 1'	View
d1nvpd2	--	46	u'Transcription initiation factor IIA subunit 2'	View
d1pina1	--	34	u'Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1'	View
d1tpga2	--	50	u'Tissue-type plasminogen activator'	View
d1twfi1	--	49	u'DNA-directed RNA polymerase II subunit RPB9'	View
d1twfi2	--	72	u'DNA-directed RNA polymerase II subunit RPB9'	View
d2akla2	--	38	u'Uncharacterized protein'	View
d2k4xa1	--	55	u'30S ribosomal protein S27ae'	View
d2v8qb1	--	73	u"5'-AMP-activated protein kinase subunit beta-2"	View
1co4A00	--	42	Metal-activated transcriptional activator protein AMT1	View
1dl6A00	--	58	Transcription initiation factor IIB	View
1co4A00	--	42	Metal-activated transcriptional activator protein AMT1	View
1dl6A00	--	58	Transcription initiation factor IIB	View
1k36A00	--	46	Proepiregulin	View
1nvpD02	--	46	Transcription initiation factor IIA subunit 2	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XTT	A	35	Serine protease inhibitor I/II	View
3CFA	L	58	GFP-like non-fluorescent chromoprotein FP595	View
3CFA	M	59	GFP-like non-fluorescent chromoprotein FP595	View
3CFA	R	58	GFP-like non-fluorescent chromoprotein FP595	View
3CFA	S	59	GFP-like non-fluorescent chromoprotein FP595	View
3CFH	L	58	GFP-like non-fluorescent chromoprotein FP595	View
3CFH	M	58	GFP-like non-fluorescent chromoprotein FP595	View
3CFH	R	58	GFP-like non-fluorescent chromoprotein FP595	View
3CFH	S	58	GFP-like non-fluorescent chromoprotein FP595	View
3FIF	F	53	Uncharacterized lipoprotein YgdR	View
3LE4	A	55	Microprocessor complex subunit DGCR8	View
3MLQ	E	38	Transcription-repair-coupling factor	View
3MLQ	G	40	Transcription-repair-coupling factor	View
3MLQ	H	42	Transcription-repair-coupling factor	View
3Q8J	A	36	Asteropsin A	View
3QTE	A	32	Defensin-6	View
3QTE	B	32	Defensin-6	View
3QTE	C	32	Defensin-6	View
3QTE	D	32	Defensin-6	View
3TVJ	I	35	Serine protease inhibitor I/II	View
4A94	C	51	Metallocarboxypeptidase inhibitor	View
4AOR	D	34	Trypsin inhibitor 3	View
4AOR	E	34	Trypsin inhibitor 3	View
4AOR	F	34	Trypsin inhibitor 3	View
4AR6	A	54	Rubredoxin	View
4C2M	1	44	DNA-directed RNA polymerases I, II, and III subunit RPABC4	View
4C2M	L	44	DNA-directed RNA polymerases I, II, and III subunit RPABC4	View
4EAG	B	58	5'-AMP-activated protein kinase subunit beta-1	View
4EAI	B	51	5'-AMP-activated protein kinase subunit beta-2	View
4F98	A	61	Uncharacterized protein	View
4GWT	A	33	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	View
4KSN	A	64	SdbC	View
4N7F	A	37	E3 ubiquitin-protein ligase NEDD4	View
4N7F	B	37	E3 ubiquitin-protein ligase NEDD4	View
4OEL	B	69	Dipeptidyl peptidase 1	View
4PKF	C	37	TutF	View
4RBX	A	32	Defensin-5	View
4REX	A	48	Transcriptional coactivator YAP1	View
4SGB	I	51	Proteinase inhibitor type-2 K	View
5BWD	C	39	TutF	View
5CUM	A	32	Defensin-5	View
5CUM	B	32	Defensin-5	View
5CUM	C	32	Defensin-5	View
5DZD	A	37	E3 ubiquitin-protein ligase Itchy homolog	View
5DZD	B	39	E3 ubiquitin-protein ligase Itchy homolog	View
5E24	B	38	Protein hairless	View
5E24	D	38	Protein hairless	View
5J4S	B	67	Bowman-Birk type proteinase inhibitor	View
5K2M	E	52	Probable lysine biosynthesis protein	View
6RXN	A	45	Rubredoxin-1	View
1I5K	A	79	Plasminogen	View
1IRO	A	53	Rubredoxin	View
1NH2	C	50	Transcription initiation factor IIA large subunit	View
1NVP	C	47	Transcription initiation factor IIA subunit 1	View
1RB9	A	51	Rubredoxin	View
1YK4	A	52	Rubredoxin	View
2A50	A	64	GFP-like non-fluorescent chromoprotein FP595	View
2BZY	A	63	Crk-like protein	View
2DSX	A	52	Rubredoxin	View
2HIP	A	71	High-potential iron-sulfur protein isozyme I	View
2J5L	A	34	Apical merozoite antigen-1	View
2PVE	A	52	Rubredoxin	View
2QN5	B	110	Bowman-Birk type bran trypsin inhibitor	View
2RDV	A	52	Rubredoxin	View
2V3B	B	53	Rubredoxin-2	View
2V8Q	B	73	5'-AMP-activated protein kinase subunit beta-2	View
5NW3	A	54	Rubredoxin	View

Topology view of query protein [ProLego results]

d2dara2

Topology Information