Protein Detail

Protein Information

Domain Id	d1scfa_
DB_Source-Class	ASTRAL-1.75B, a.26.1.2
Molecule	u'Kit ligand'
Residues	116
Sequence
SSE Sequence^*(6)	`HEHHEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ca.Ha.0.0-0.0.0.Hp-Ha.Ea.Ha-0.Cp-Ha`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1scfa_

Protein Id: d1scfa_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1scfa_

Protein Id: d1scfa_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHE	Ha.0-0	False	3BPJ:A, 3BPJ:B, 3BPJ:C, 3BPJ:D, 3MTU:E, 3MTU:F, 4CLQ:B, 4HFX:A, 4IAO:C, 4IAO:D, 4OM3:A, 4X86:A, 4YTW:A, 4YTW:C, 5FD9:A, 1YKH:B, 2B9C:A,	d1ykhb1, d2bskb1,
3	HEH	0.0-Hp	False		d1rf8b_,
4	HHEH	Ha.0.0-0.Hp-Ha	False	2EHS:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1SCF	A	116	Kit ligand	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Y5I	A	97	Protein S100	View
2Y5I	B	96	Protein S100	View
2Y5I	C	98	Protein S100	View
2Y5I	D	98	Protein S100	View
2Y5I	E	97	Protein S100	View
2Y5I	F	98	Protein S100	View
2Z3Q	A	114	Interleukin-15	View
2Z3Q	C	117	Interleukin-15	View
3A4U	B	65	Multiple coagulation factor deficiency protein 2	View
3NSO	A	94	Protein S100-A3	View
3NSO	B	93	Protein S100-A3	View
3TGX	B	115	Interleukin-21	View
3TGX	D	117	Interleukin-21	View
3TGX	F	113	Interleukin-21	View
3TGX	H	116	Interleukin-21	View
3TGX	J	116	Interleukin-21	View
3TGX	L	110	Interleukin-21	View
3TGX	N	107	Interleukin-21	View
3TGX	P	110	Interleukin-21	View
3TZ1	A	71	Troponin C	View
3WU2	U	97	Photosystem II 12 kDa extrinsic protein	View
4CFQ	A	85	Protein S100-A4	View
4CFQ	C	85	Protein S100-A4	View
4DIR	A	78	Protein S100-A5	View
4I77	Z	97	Interleukin-13	View
4IL6	U	97	Photosystem II 12 kDa extrinsic protein	View
4JWQ	A	69	Calcium-dependent protein kinase, putative	View
4JWQ	C	73	Calcium-dependent protein kinase, putative	View
4PCW	A	87	Filaggrin	View
4PCW	C	91	Filaggrin	View
4Q57	A	65	Calmodulin-3	View
4RS1	A	105	Granulocyte-macrophage colony-stimulating factor	View
4YGB	B	63	Multiple coagulation factor deficiency protein 2	View
4YGB	D	63	Multiple coagulation factor deficiency protein 2	View
4ZF7	B	127	Uncharacterized protein	View
5B66	U	97	Photosystem II 12 kDa extrinsic protein	View
5H2F	U	97	Photosystem II 12 kDa extrinsic protein	View
5IBW	A	76	Calcium-binding EF-hand domain-containing protein	View
5IBW	B	73	Calcium-binding EF-hand domain-containing protein	View
5K89	A	85	Protein S100-A1	View
5K89	H	89	Protein S100-A1	View
5KNH	I	97	IL13	View
5TIS	U	97	Photosystem II 12 kDa extrinsic protein	View
1ETE	A	134	Fms-related tyrosine kinase 3 ligand	View
1IG5	A	75	Protein S100-G	View
1J55	A	88	Protein S100-P	View
1QX2	A	75	Protein S100-G	View
1SCF	A	116	Kit ligand	View
2EGD	A	86	Protein S100-A13	View
2O27	A	126	Kit ligand	View
2PSM	A	117	Interleukin-15	View

Topology view of query protein [ProLego results]

d1scfa_

Topology Information