Protein Detail

Protein Information

Domain Id	d1jwib_
DB_Source-Class	ASTRAL-1.75B, d.169.1.1
Molecule	u'Snaclec bitiscetin subunit beta'
Residues	123
Sequence
SSE Sequence^*(9)	`EEHEHEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ca.0.0.Ea.Ea.0-0.0.0.Ea.0.Ep.0-0.Cp.Ca.0.0.Ep-Ca.Ea.Cp.0.Ca-0.0.0.Ea-0.0.Cp-0.Ea-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1jwib_

Protein Id: d1jwib_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1jwib_

Protein Id: d1jwib_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	EHE	0.0-Ea	True	3S2R:A, 3S2R:B, 4EZF:A, 4EZF:B, 4OOA:A, 4OOA:B, 4OOA:C, 4OOA:D, 4OOA:E, 4OOA:F, 4R10:B,	d1clvi_, d1k91a_, 2o9uX00,
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	HEEE	0.Ea.Ea-0.Ep-0	True	3R45:C, 3UL5:A, 3UL5:B, 3UL5:D, 4TX4:A, 4TX4:B,
5	EHEEE	0.0.Ea.Ea-Ea.0.Ep-0.0-0	True	3UEP:B, 4TT9:A, 4TT9:B, 4TT9:C, 4TT9:D, 4YX7:B, 4YX7:E,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1JWI	B	123	Snaclec bitiscetin subunit beta	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BX4	A	132	Snaclec rhodocytin subunit alpha	View
3BX4	B	122	Snaclec rhodocytin subunit beta	View
3BX4	C	134	Snaclec rhodocytin subunit alpha	View
3BX4	D	123	Snaclec rhodocytin subunit beta	View
3CAD	A	123	Killer cell lectin-like receptor 7	View
3UBU	A	130	Snaclec agglucetin subunit alpha-1	View
3UBU	B	125	Snaclec agglucetin subunit beta-2	View
4QKH	A	123	C-type lectin domain family 2 member D	View
1AQZ	A	142	Ribonuclease mitogillin	View
1C3A	A	135	Snaclec flavocetin-A subunit alpha	View
1C3A	B	125	Snaclec flavocetin-A subunit beta	View
1EGI	A	129	Macrophage mannose receptor 1	View
1FVU	A	133	Snaclec botrocetin subunit alpha	View
1FVU	B	121	Snaclec botrocetin subunit beta	View
1IXX	A	129	Snaclec coagulation factor IX/factor X-binding protein subunit A	View
1J34	A	129	Snaclec coagulation factor IX-binding protein subunit A	View
1J34	B	123	Snaclec coagulation factor IX/factor X-binding protein subunit B	View
1JWI	A	122	Snaclec bitiscetin subunit alpha	View
1JWI	B	123	Snaclec bitiscetin subunit beta	View
1OZ7	A	131	Snaclec echicetin subunit alpha	View
1OZ7	B	123	Snaclec echicetin subunit beta	View
1SB2	A	132	Snaclec rhodocetin subunit alpha	View
1SB2	B	124	Snaclec rhodocetin subunit beta	View
1UMR	A	135	Snaclec convulxin subunit alpha	View
1UMR	C	125	Snaclec convulxin subunit beta	View
1V7P	A	134	Snaclec EMS16 subunit alpha	View
1V7P	B	127	Snaclec EMS16 subunit beta	View
1WT9	A	129	Snaclec agkisacutacin subunit A	View
1WT9	B	123	Snaclec anticoagulant protein subunit B	View
2C6U	A	122	C-type lectin domain family 1 member B	View
2QTP	A	143	Uncharacterized protein	View

Topology view of query protein [ProLego results]

d1jwib_

Topology Information