Protein Detail

Protein Information

Domain Id	d3pgga_
DB_Source-Class	ASTRAL-1.75B, b.38.1.1
Molecule	u'U6 snRNA-associated Sm-like protein LSm5. SM domain'
Residues	78
Sequence
SSE Sequence^*(7)	`HEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ea.Ea.0.0-Cp.Ep.0.Ep.0-0.0.Ea.Ea-0.Ep.0-0.Ea-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d3pgga_

Protein Id: d3pgga_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d3pgga_

Protein Id: d3pgga_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.0-Ep	False		d2jdih2,
4	EEEE	Ea.Ea.0-0.Ep-Ea	False		d1afpa_, d1ed7a_, 1afpA00, 1afpA00, 1ed7A00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3PGG	A	78	U6 snRNA-associated Sm-like protein LSm5. SM domain	View
4M7D	E	77	U6 snRNA-associated Sm-like protein LSm5	View
4M7D	L	76	U6 snRNA-associated Sm-like protein LSm5	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZJR	M	108	50S ribosomal protein L19	View
3AQQ	A	99	Calcium-regulated heat stable protein 1	View
3AQQ	C	97	Calcium-regulated heat stable protein 1	View
3AQQ	D	98	Calcium-regulated heat stable protein 1	View
3N7S	A	94	Calcitonin gene-related peptide type 1 receptor	View
3N7S	B	95	Calcitonin gene-related peptide type 1 receptor	View
3PGG	A	78	U6 snRNA-associated Sm-like protein LSm5. SM domain	View
3S6N	F	74	Small nuclear ribonucleoprotein F	View
4C92	E	84	U6 snRNA-associated Sm-like protein LSm5	View
4C92	F	77	U6 snRNA-associated Sm-like protein LSm6	View
4EO1	A	67	Attachment protein G3P	View
4ERS	A	96	Glucagon receptor	View
4JPH	B	111	Gremlin-2	View
4M7D	D	74	U6 snRNA-associated Sm-like protein LSm6	View
4M7D	E	77	U6 snRNA-associated Sm-like protein LSm5	View
4M7D	K	74	U6 snRNA-associated Sm-like protein LSm6	View
4M7D	L	76	U6 snRNA-associated Sm-like protein LSm5	View
4PNO	A	64	RNA-binding protein Hfq	View
4XQ3	C	77	Like-Sm ribonucleoprotein core	View
5II0	B	103	Calcitonin receptor	View
1RGX	A	89	Resistin	View
1SKZ	A	104	Antistasin	View
2E12	A	93	Uncharacterized protein	View
2I45	A	93	Uncharacterized protein	View

Topology view of query protein [ProLego results]

d3pgga_

Topology Information