Protein Detail

Protein Information

Domain Id	d3mdfa_
DB_Source-Class	ASTRAL-1.75B, d.58.7.1
Molecule	u'Peptidyl-prolyl cis-trans isomerase E'
Residues	83
Sequence
SSE Sequence^*(10)	`EHEEEEHEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.0.Ea.0.Ca.0.Ea.0-0.0.0.0.0.0.0.0-0.0.Ea.0.0.0.Ca-0.Cp.0.0.0.0-Ea.Hr.0.0.0-Cp.Ca.0.0-0.0.0-0.0-Ea`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d3mdfa_

Protein Id: d3mdfa_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d3mdfa_

Protein Id: d3mdfa_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	EEEE	0.Ea.0-0.0-Ea	False		d1jhna3, d1nlta3, 1y8eB04,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3MDF	A	83	Peptidyl-prolyl cis-trans isomerase E	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BT3	A	129	Transcriptional regulator, AraC family	View
3EY8	A	125	Biphenyl-2,3-diol 1,2-dioxygenase III-related protein	View
3EY8	B	126	Biphenyl-2,3-diol 1,2-dioxygenase III-related protein	View
3FCD	A	114	Orf125EGC139	View
3G12	A	110	Putative lactoylglutathione lyase	View
3G12	B	113	Putative lactoylglutathione lyase	View
3GHJ	A	114	Putative integron gene cassette protein	View
3HUH	A	124	Virulence protein STM3117	View
3HUH	B	119	Virulence protein STM3117	View
3HUH	C	119	Virulence protein STM3117	View
3HUH	D	124	Virulence protein STM3117	View
3ITW	A	123	Putative uncharacterized protein tioX	View
3ITW	B	127	Putative uncharacterized protein tioX	View
3L7T	A	133	Uncharacterized protein	View
3L7T	B	133	Uncharacterized protein	View
3L7T	C	133	Uncharacterized protein	View
3L7T	D	133	Uncharacterized protein	View
3MDF	A	83	Peptidyl-prolyl cis-trans isomerase E	View
3SK2	A	132	Phenazine antibiotic resistance protein EhpR	View
3SK2	B	132	Phenazine antibiotic resistance protein EhpR	View
3ZW5	B	123	Glyoxalase domain-containing protein 5	View
4A8X	A	88	RNA-binding protein with serine-rich domain 1	View
4DSD	A	122	Uncharacterized protein	View
4DSD	B	122	Uncharacterized protein	View
4HC5	A	122	Glyoxalase/bleomycin resistance protein/dioxygenase	View
4HC5	B	122	Glyoxalase/bleomycin resistance protein/dioxygenase	View
4HC5	C	121	Glyoxalase/bleomycin resistance protein/dioxygenase	View
4HC5	D	126	Glyoxalase/bleomycin resistance protein/dioxygenase	View
4MTS	A	129	Lactoylglutathione lyase	View
4MTS	B	127	Lactoylglutathione lyase	View
4N04	A	110	Glyoxalase/bleomycin resistance protein/dioxygenase	View
4N04	B	109	Glyoxalase/bleomycin resistance protein/dioxygenase	View
4PAV	D	107	Glyoxalase family protein	View
4QOA	A	125	Uncharacterized protein	View
5C68	A	109	Glyoxalase/bleomycin resistance protein/dioxygenase	View
5LSL	A	79	Protein HSH49	View
5LSL	B	79	Protein HSH49	View
5LSL	C	79	Protein HSH49	View
5LSL	D	79	Protein HSH49	View
5UHJ	A	120	Glyoxalase/bleomycin resisance protein/dioxygenase	View
5UHJ	B	119	Glyoxalase/bleomycin resisance protein/dioxygenase	View
5UJP	A	112	Glyoxalase/bleomycin resisance protein/dioxygenase	View
1ECS	A	120	Bleomycin resistance protein	View
1F9Z	A	128	Lactoylglutathione lyase	View
1TSJ	A	111	Uncharacterized protein	View
1U6L	A	127	Uncharacterized protein	View
2P7O	A	127	Fosfomycin resistance protein FosX	View

Topology view of query protein [ProLego results]

d3mdfa_

Topology Information