ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1atzB00 3.40.50.410 189 see topology von Willebrand factor Homo sapiens
CATH 3.5 1atzB00 3.40.50.410 189 see topology von Willebrand factor Homo sapiens
CATH 3.5 1ijbA00 3.40.50.410 202 see topology von Willebrand factor Homo sapiens
ASTRAL-1.75B d1atza_ c.62.1.1 184 see topology u'von Willebrand factor' Homo sapiens
ASTRAL-1.75B d1ijba_ c.62.1.1 202 see topology u'von Willebrand factor' Homo sapiens
ASTRAL-1.75B d3gxba_ c.62.1.0 178 see topology u'von Willebrand factor' Homo sapiens
ASTRAL-1.75B d1uc2a_ d.261.1.1 480 see topology u'tRNA-splicing ligase RtcB' Pyrococcus horikoshii
ASTRAL-1.75B d1a79a1 c.52.2.1 97 see topology u'tRNA-splicing endonuclease' Methanocaldococcus jannaschii
ASTRAL-1.75B d1a79a2 d.75.1.1 74 see topology u'tRNA-splicing endonuclease' Methanocaldococcus jannaschii
ASTRAL-1.75B d1r0va1 c.52.2.1 78 see topology u'tRNA-splicing endonuclease' Archaeoglobus fulgidus
ASTRAL-1.75B d1r0va2 c.52.2.1 91 see topology u'tRNA-splicing endonuclease' Archaeoglobus fulgidus
ASTRAL-1.75B d1r0va3 d.75.1.1 75 see topology u'tRNA-splicing endonuclease' Archaeoglobus fulgidus
ASTRAL-1.75B d1r11a3 d.75.1.1 58 see topology u'tRNA-splicing endonuclease' Archaeoglobus fulgidus
ASTRAL-1.75B d2gw6a1 c.52.2.1 122 see topology u'tRNA-splicing endonuclease subunit Sen15' Homo sapiens
ASTRAL-1.75B d1wwra1 c.97.1.2 151 see topology u'tRNA-specific adenosine deaminase' Aquifex aeolicus
ASTRAL-1.75B d2a8na1 c.97.1.2 130 see topology u'tRNA-specific adenosine deaminase' Agrobacterium tumefaciens
ASTRAL-1.75B d2nx8a_ c.97.1.0 168 see topology u'tRNA-specific adenosine deaminase' Streptococcus pyogenes
ASTRAL-1.75B d1vlya1 b.44.2.1 79 see topology u'tRNA-modifying protein YgfZ' Escherichia coli
ASTRAL-1.75B d1vlya2 d.250.1.1 235 see topology u'tRNA-modifying protein YgfZ' Escherichia coli
ASTRAL-1.75B d1iq8a1 c.1.20.1 355 see topology u'tRNA-guanine(15) transglycosylase' Pyrococcus horikoshii
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Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins