ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 12asA00 3.30.930.10 327 see topology Aspartate--ammonia ligase Escherichia coli
CATH 3.5 16vpA00 1.10.1290.10 311 see topology Tegument protein VP16 Human alphaherpesvirus 1
CATH 3.5 1a0aA00 4.10.280.10 63 see topology Phosphate system positive regulatory protein PHO4 Saccharomyces cerevisiae
CATH 3.5 1a0cA00 3.20.20.150 437 see topology Xylose isomerase Thermoanaerobacterium thermosulfurigenes
CATH 3.5 1a0iA02 2.40.50.140 101 see topology DNA ligase Escherichia virus T7
CATH 3.5 1a0pA01 1.10.150.130 91 see topology Tyrosine recombinase XerD Escherichia coli
CATH 3.5 1a0pA02 1.10.443.10 180 see topology Tyrosine recombinase XerD Escherichia coli
CATH 3.5 1a0sP00 2.40.170.10 413 see topology Sucrose porin Salmonella enterica
CATH 3.5 1a17A00 1.25.40.10 159 see topology Serine/threonine-protein phosphatase 5 Homo sapiens
CATH 3.5 1a1wA00 1.10.533.10 83 see topology FAS-associated death domain protein Homo sapiens
CATH 3.5 1a1xA00 2.40.15.10 106 see topology Protein p13 MTCP-1 Homo sapiens
CATH 3.5 1a2pA00 3.10.450.30 108 see topology Ribonuclease Bacillus amyloliquefaciens
CATH 3.5 1a32A00 1.10.287.10 85 see topology 30S ribosomal protein S15 Geobacillus stearothermophilus
CATH 3.5 1a34A00 2.60.120.220 147 see topology Coat protein Tobacco virtovirus 1
CATH 3.5 1a3aC00 3.40.930.10 146 see topology PTS system mannitol-specific EIICBA component Escherichia coli
CATH 3.5 1a4pA00 1.10.238.10 92 see topology Protein S100-A10 Homo sapiens
CATH 3.5 1a5rA00 3.10.20.90 103 see topology Small ubiquitin-related modifier 1 Homo sapiens
CATH 3.5 1a62A01 1.10.720.10 44 see topology Transcription termination factor Rho Escherichia coli
CATH 3.5 1a6cA02 2.60.120.20 165 see topology Capsid protein Tobacco ringspot virus
CATH 3.5 1a6fA00 3.30.230.10 113 see topology Ribonuclease P protein component Bacillus subtilis
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Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins