ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Molecule: [Protein molecule containing the word as query]
Source: [Source organism of protein ]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d1y1xa_ a.39.1.8 182 see topology u'Programmed cell death 6 protein-like protein' Leishmania major
ASTRAL-1.75B d1hqva_ a.39.1.8 178 see topology u'Programmed cell death protein 6' Mus musculus
CATH 3.5 1np8A00 1.10.238.10 149 see topology Calpain small subunit 1 Rattus norvegicus
ASTRAL-1.75B d2zfda1 a.39.1.5 183 see topology u'Calcineurin B-like protein 2' Arabidopsis thaliana
CATH 3.5 2zfdA00 1.10.238.10 183 see topology Calcineurin B-like protein 2 Arabidopsis thaliana
CATH 3.5 1ibrB00 1.25.10.10 458 see topology Importin subunit beta-1 Homo sapiens
ASTRAL-1.75B d1qgra_ a.118.1.1 872 see topology u'Importin subunit beta-1' Homo sapiens
ASTRAL-1.75B d2im9a1 d.3.1.13 299 see topology u'Uncharacterized protein' Legionella pneumophila
ASTRAL-1.75B d1vola2 a.74.1.2 109 see topology u'Transcription initiation factor IIB' Homo sapiens
ASTRAL-1.75B d1ig6a_ a.4.3.1 107 see topology u'AT-rich interactive domain-containing protein 5B' Homo sapiens
CATH 3.5 1ig6A00 1.10.150.60 107 see topology AT-rich interactive domain-containing protein 5B Homo sapiens
ASTRAL-1.75B d1dwka1 a.35.1.4 84 see topology u'Cyanate hydratase' Escherichia coli
ASTRAL-1.75B d2o4aa_ a.35.1.7 84 see topology u'DNA-binding protein SATB1' Homo sapiens
ASTRAL-1.75B d1b0na2 a.35.1.3 68 see topology u'HTH-type transcriptional regulator SinR' Bacillus subtilis
ASTRAL-1.75B d1lmb3_ a.35.1.2 87 see topology u'Repressor protein cI' Escherichia virus Lambda
ASTRAL-1.75B d2r1jl_ a.35.1.2 66 see topology u'Repressor protein C2' Salmonella virus P22
ASTRAL-1.75B d3s8qa_ a.35.1.0 76 see topology u'Regulatory protein' Enterobacter sp. RFL1396
CATH 3.5 2r1jL00 1.10.260.40 66 see topology Repressor protein C2 Salmonella virus P22
ASTRAL-1.75B d2b5aa1 a.35.1.3 77 see topology
ASTRAL-1.75B d1tzya_ a.22.1.1 106 see topology u'Histone H2A-IV' Gallus gallus
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Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins